Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1302 ATGTCCCGGTCCGTCCCAATTCCACTCGGTTCAGCCCTAAATCGCCTTCGAAGGCCAAGTGCCCTACACCACATCGTCTTCCCCGTCTACATTGATGATCAATTCACTGTGGTGTCACGTGAAGCCGTCGGAGGCTCCACCGCCGCCGTTCACCGCCGCCGCTTCCGCCGTCATCTCAACTGTGCTGCTGCTACAAGGTCCAACTCCTTTAAGTCCGCGGACGAATCTTCCTTCCTTTTACCCTATCCCTCTGCTCCCCGCTTGGGGATGCCGATCAAGAGGCCACTCTACGACCGCCAGAACCATCGTCCTCACCATCTTCCTCTCCGACGGCGCCGTTTTCTCTATGAAAATCAGACTGGAAAGTTCAGCTATGGCTATTCTAGTTTCAAGGGCAAGAGGGCTTCGATGGAGGACTTCTATGAAACAAGAATCTCTGAAGTTGATGGGCAGATGGTCGCATTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAACCATCCAGACTTTATCAAAGATACAAAGACAGCTATTATCGAGGTTTTTAGACAGACAGATGCCGATTATATTAATGAAGAGAGAGGGCAGCAGAAAGATGCTGGGTCAACTGCATCAACTGCTGTCCTGTTAGGGGATCGTCTCCTTGTTGCTAATGTTGGGGATTCCAGAGTAGTTGCGTCTAGAGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAGCCTGATAGATCAGATGAACGGGAAAGGATTGAACAAGCTGGAGGTTTCATTATTTGGGCAGGAACTTGGAGGGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTTGGAGATAAGCTACTCAAACAATACGTTGTCGCTGATCCCGAAATTAAGGAAGCTGTAGCATTAGTGCAACACATCCAAGATGCAGAGGTGGCGTCAAGAAAACTAATCCAAGAAGCTTATTCACGAGGGAGTGCCGACAACATTACTTGCGTCATTGTCTCCACCAAAATGGTGAACGATACTGAGTATTACGACATTCTCGGCGTTCGTCCTTCTGCTTCCGAGGAGGAGATTCGTAAGGCCTACTATCTTAAGGCGAAACAAGTCCATCCGGATAAGAATTTAAATGATCCTCAAGCTGCCGAAAGGTTTCAGGCAAGTGTACACTGGTTCATCGTACTAGGTGAAGCTTATCAAGTTTTGAGTGATGCAGTCCAAAGAGATGTGTATGATAGGAATGGGAAGCATAGTATTACTAGGGAATCCATGCTTGACCCTACTGCTGTCTTTGCTCTTCTATTTGGAAGTGAATTATTTGAGGACTACATTGGACATTTAGCTGTAGCATCAATGGCTTCATCTGAATTAGAGAGTGAAACTGGTAATCCAGAGAGATTACATGATAAGTTGAAGGCAAGTGACAAAGATGGATTCTTACGGCATGCTGAATCTGAAGCCAAAAGACTTTCTAATGCGGGTGCTTTTCAGTTGTTACAACTTCAAGATGATATTTCCCGGCAGTTTAAAATGGATGGTAGTGGCCCTGGAAATGATATTGAATCGCATATTCGAGCGAATAAAGACACATTCCTGAATTCTTTGTGGAAGCTTAACGTAGTGGACATAGAACTGACTCTTATAAATGTGTGCCAGATGGTGCTACGGGATAATACTGTTAAGAAGGAAGAACTAAAAGCTCGTGCTCTGGCTCTGAAGATTCTTGGAAAGATATTCCAGGAGAAGCATGCACAAAATTCTGGAACGTCAGGAAAGAAAAGTGCTGCTGCAGTAGATAACGATGAAACGAGTTCAGAGAGCAGCGATGATGAGGATCCCCAAAGACCACTATCATATCGAACTCCTTTTCTTACTCAGGCAACTCCTGCAGAGGTATTGGTAGACTGTTCAGATGCCTCTGTAACCCAGCCTTTGATGTGGACGATGAAGAAATCGTGTATAAAAGCAAATGATGAAGATATCTATTCATGA 2019 45.22 MSRSVPIPLGSALNRLRRPSALHHIVFPVYIDDQFTVVSREAVGGSTAAVHRRRFRRHLNCAAATRSNSFKSADESSFLLPYPSAPRLGMPIKRPLYDRQNHRPHHLPLRRRRFLYENQTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFKNLSNHPDFIKDTKTAIIEVFRQTDADYINEERGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERERIEQAGGFIIWAGTWRVGGILAVSRAFGDKLLKQYVVADPEIKEAVALVQHIQDAEVASRKLIQEAYSRGSADNITCVIVSTKMVNDTEYYDILGVRPSASEEEIRKAYYLKAKQVHPDKNLNDPQAAERFQASVHWFIVLGEAYQVLSDAVQRDVYDRNGKHSITRESMLDPTAVFALLFGSELFEDYIGHLAVASMASSELESETGNPERLHDKLKASDKDGFLRHAESEAKRLSNAGAFQLLQLQDDISRQFKMDGSGPGNDIESHIRANKDTFLNSLWKLNVVDIELTLINVCQMVLRDNTVKKEELKARALALKILGKIFQEKHAQNSGTSGKKSAAAVDNDETSSESSDDEDPQRPLSYRTPFLTQATPAEVLVDCSDASVTQPLMWTMKKSCIKANDEDIYS 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35901246 35912220 - Maker00008458 Lcy10g1302 644813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1302 672 SUPERFAMILY PP2C-like 118 343 IPR036457 -
Lcy10g1302 672 PRINTS DnaJ domain signature 354 372 IPR001623 -
Lcy10g1302 672 PRINTS DnaJ domain signature 372 387 IPR001623 -
Lcy10g1302 672 PRINTS DnaJ domain signature 396 416 IPR001623 -
Lcy10g1302 672 PRINTS DnaJ domain signature 416 435 IPR001623 -
Lcy10g1302 672 ProSitePatterns PPM-type phosphatase domain signature. 155 163 IPR000222 GO:0043169(InterPro)
Lcy10g1302 672 ProSitePatterns Nt-dnaJ domain signature. 401 420 IPR018253 -
Lcy10g1302 672 ProSiteProfiles PPM-type phosphatase domain profile. 124 345 IPR001932 -
Lcy10g1302 672 CDD PP2Cc 123 343 IPR001932 -
Lcy10g1302 672 CDD DnaJ 352 413 IPR001623 -
Lcy10g1302 672 Gene3D - 118 346 IPR036457 -
Lcy10g1302 672 MobiDBLite consensus disorder prediction 594 627 - -
Lcy10g1302 672 Gene3D DnaJ domain 347 438 IPR036869 -
Lcy10g1302 672 SMART PP2C_4 114 343 IPR001932 -
Lcy10g1302 672 Pfam Protein phosphatase 2C 125 307 IPR001932 -
Lcy10g1302 672 Pfam DnaJ domain 352 421 IPR001623 -
Lcy10g1302 672 SMART dnaj_3 351 416 IPR001623 -
Lcy10g1302 672 SUPERFAMILY Chaperone J-domain 346 454 IPR036869 -
Lcy10g1302 672 Pfam X-domain of DnaJ-containing 503 598 IPR026894 -
Lcy10g1302 672 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 318 485 IPR052423 -
Lcy10g1302 672 ProSiteProfiles dnaJ domain profile. 352 424 IPR001623 -
Lcy10g1302 672 MobiDBLite consensus disorder prediction 594 611 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1302 Lcy-Chr10:35901246 Lcy9g1917 Lcy-Chr9:44161374 1.62E-98 dispersed
Lcy10g1302 Lcy-Chr10:35901246 Lcy4g0673 Lcy-Chr4:8138087 5.59E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1302 K17506 - csv:101219818 456.832