Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1303 ATGAGCTCGAGAATAGGACCAGACAACAGACTTTGGAGGCGAAATAGGCCAAAGGGTTGGGCCAAGGTCACGTCTTCTCTTTCTCATACAAATTTACCGTTGGTGGCACGTGAAGCTCAGGTGAGTTCTTTCGATCCAGATTTTGCCATCAACAACCTTTGTAGCTGCATAATTGACCAAAAGCTAAAAGGGCTGTTAAAGGAAATGGCGAAGGCTCAGGGAAGAGGCAGTGCTGTCGGTAGAGGCGTCGCTGTTGCTGCCGTTATCGGGTTGGTTATGATGTCTCAGTTGGAGAGCATTGTGGCAGCTGCAGTTTTCAATGTCGGTGGCGCCGGTGGATGGACTTTTAAGGTCGAAAGTTGGCCAAATGGAAAACGTTTTCGTCCCGGTGACATTCTCAAGTTCAATTACGACCCATCGATTCACAACGTGGTGGTGGTGGACCAAGCTGGGTACGCCAATTGCAGAACTCCGGCGGGTGCGAAAGTGTACAAATCCGGCCACGACCAGATAACCTTGCCCAAAGGACAGAGCTATTTCATCTGCAACTTCGCCGGCCACTGCGAGTCCGCCATGAAGATCGCCGTCAATGCTGTCTAA 600 50.67 MSSRIGPDNRLWRRNRPKGWAKVTSSLSHTNLPLVAREAQVSSFDPDFAINNLCSCIIDQKLKGLLKEMAKAQGRGSAVGRGVAVAAVIGLVMMSQLESIVAAAVFNVGGAGGWTFKVESWPNGKRFRPGDILKFNYDPSIHNVVVVDQAGYANCRTPAGAKVYKSGHDQITLPKGQSYFICNFAGHCESAMKIAVNAV 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35916295 35919063 - Maker00008475 Lcy10g1303 644814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1303 199 PANTHER BLUE COPPER PROTEIN 101 197 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Lcy10g1303 199 Pfam Plastocyanin-like domain 114 191 IPR003245 GO:0009055(InterPro)
Lcy10g1303 199 Gene3D - 104 199 IPR008972 -
Lcy10g1303 199 SUPERFAMILY Cupredoxins 104 198 IPR008972 -
Lcy10g1303 199 CDD Plantacyanin 104 198 IPR041844 -
Lcy10g1303 199 ProSiteProfiles Phytocyanin domain profile. 104 199 IPR003245 GO:0009055(InterPro)
Lcy10g1303 199 FunFam basic blue protein-like 104 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1303 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1303 Lcy-Chr10:35916295 Lcy6g0372 Lcy-Chr6:3449023 6.98E-06 dispersed
Lcy10g1303 Lcy-Chr10:35916295 Lcy9g1011 Lcy-Chr9:33437528 2.26E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1192 Blo01g01321 . Bda01g00688 . Bpe02g00618 . . Bma01g02106 . Cmo15g00642 . . . . Sed01g0954 . . Bhi04g01831 Tan11g1205 Cmetu03g0089 . Hepe02g2751 . Lcy10g1303 . . . . . . . . . . Cone20ag0408 . . . Cme03g00426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00269 . Chy03g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000300 8 5 4 2 2 5 6 3 5 4 3 5 8 4 4 7 5 4 3 4 4 5 2 4 6 5 4 8 6 4 139