Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1305 ATGGCACTCGATAACTGTATACAGCTGAGCACCGCCGCCGCCATGTGCGCCACCACTTCCATCCCCAAATCTCACCCCTTCTCTTCAAATTTCCACCAAAAGACCACCTTATCCCTTCAACGCCTCAACAAATTTCCCACTTCCACTTCGCGATTCAGCCTCTTCTCATCTTCCACTCTCAGAAAACCCGCCGCCGTCACCTGTAAAGCTCGCGGAGCCGTTGACGACGTGAAAGAGGTTACAGAGTCGAGCTGGAACGAGCTGGTGGTGGGCAGTCAGAAGACTGTGCTGGTGGAGTTTTGGGCGCCGTGGTGTGGACCGTGTAAGATGATCGAGCCAGTGATTAAGGATTTGGCGCAGGAATATGCAGGGAAAATCGTGTGTTTGAAGTTGAATACGGACGTTAGCCCGAATGTGGCCTCGAAATATGGGATCAGAAGCATTCCCACGGTTCTGTTCTTCAAGAATGGGCAGAAGAGAGAGAGCGTAATTGGGGCTGTGCCCAAATCGACCTTGTCCGCCACCATTGATAAGTATCTCGAGGTTTGA 549 51.91 MALDNCIQLSTAAAMCATTSIPKSHPFSSNFHQKTTLSLQRLNKFPTSTSRFSLFSSSTLRKPAAVTCKARGAVDDVKEVTESSWNELVVGSQKTVLVEFWAPWCGPCKMIEPVIKDLAQEYAGKIVCLKLNTDVSPNVASKYGIRSIPTVLFFKNGQKRESVIGAVPKSTLSATIDKYLEV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35940847 35942399 + Maker00008441 Lcy10g1305 644816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1305 182 Pfam Thioredoxin 77 178 IPR013766 -
Lcy10g1305 182 SUPERFAMILY Thioredoxin-like 67 181 IPR036249 -
Lcy10g1305 182 ProSitePatterns Thioredoxin family active site. 97 115 IPR017937 -
Lcy10g1305 182 NCBIfam thioredoxin 81 179 IPR005746 GO:0015035(InterPro)
Lcy10g1305 182 FunFam Thioredoxin 72 180 - -
Lcy10g1305 182 PRINTS Thioredoxin family signature 96 104 - -
Lcy10g1305 182 PRINTS Thioredoxin family signature 104 113 - -
Lcy10g1305 182 PRINTS Thioredoxin family signature 144 155 - -
Lcy10g1305 182 PANTHER GEO12009P1 63 180 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Lcy10g1305 182 CDD TRX_family 83 177 - -
Lcy10g1305 182 ProSiteProfiles Thioredoxin domain profile. 56 181 IPR013766 -
Lcy10g1305 182 Gene3D Glutaredoxin 76 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1305 K03671 - - csv:101218257 279.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1305 Lcy-Chr10:35940847 Lcy6g1196 Lcy-Chr6:14041865 2.44E-44 dispersed
Lcy10g1305 Lcy-Chr10:35940847 Lcy9g2230 Lcy-Chr9:46859239 1.20E-14 transposed
Lcy10g1305 Lcy-Chr10:35940847 Lcy7g0239 Lcy-Chr7:2068845 1.88E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008381 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35