Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1309 ATGCCTCGTCGAAGGGATGACGACGATGATGACATTGACGCCGATGAGGAAGAGTATGAAGAGGAGATGGAACAGCCTCTGGACGACGAGGAGGAAGAGGAAGATCGGTCGAGTAGGAAGCGGAGGAGATCAGATTTCATAGACGATGTTGCGGATGAAGATGAGGACGAGGAGGAGGAAGACGAGGACGAGGACGAAGATTTTGGTGGCGGTGCTAGGAGGCGGCGTGCCAAGAGGCCTAGCGGTTCTCAGTTTTTGGATATTGAGGCTGAGGTTGATAGCGATGACGATGAAGAGGAGGACGACGCGGAGGACGACTTCATAGTTGATAATGCAGCAGAGGATATACCTGACGAAGATGAAAATAGAAGGATGCATCGCCGTCCATTGCTACCACGAGAGGACGAACAGGAAGATGTTGAAGCGCTTGAAAGAAGGATTCAAGCTAGATATGCAAGGTCAAATCATCAGGAATATGATGAGGAGACAACAGAAGTGGAGCAGCAAGCTCTTTTACCTTCTGTAAGAGATCCAAAATTGTGGATGGTGAAATGCGCGATTGGCCGTGAGCGAGAGGCTGCTGTTTGTCTAATGCAAAAGTGCATTGATAGAGGGCCTGAAATGCAAATAAGATCTGCAATTGCTCTTGATCATTTGAAGAACTATATATATATTGAAGCTGACAAAGAAGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAACATATATTCACAAAAAGTAATGCTTGTTCCAATTAAAGAAATGACTGATGTTCTCTCCGTTGAAAGCAAAGCAATTGATCTTTCTAGAGATACATGGGTCAGGATGAAGATTGGGACATATAAGGGGGATCTTGCCAAGGTGGTGGATGTTGATAATGTGCGGCAGAGGGTTACTGTGAAACTGATTCCACGGATAGACCTACAAGCTCTTGCAAATAAATTGGAAGGTAGAGAAGTTGCTAAGAAGAAGGCATTTGTTCCTCCACCACGTTTTATGAATATTGATGAAGCTAGAGAATTGCATATCCGTGTAGAGCGCAGACGTGATCCCATTACTGGAGAATACTTTGAGAATATAGGTGGCATGTTTTTCAAAGATGGTTTCTTGTATAAAACAGTGTCCATGAAGTCAATAAGCGCCCAAAACATAAAGCCGACTTTTGATGAACTTGAAAAATTTCGAAAGCCTGGAGAAAATGGAGATGGGGATATTGCTAGCTTGTCCACCCTGTTTGCAAATCGGAAAAAAGGACACTTTATGAAGGGTGATGCGGTAATTGTGGTTAAAGGGGATCTCAAGAACCTGAAAGGATGGGTTGAGAAAGTAGAGGAAGAGAATGTCCACATTAGACCAGAAATGAAGGGCCTTCCAAAAACTCTTGCTGTGAATGAAAGAGAACTTTGTAAGTACTTTGAGCCTGGGAATCATGTAAAAGTCGTATCGGGCACTCAGGAGGGGGCTACTGGTATGGTTGTGAAGGTGGAACAGCATGTGCTTATTATACTATCTGATACAACCAAAGAACATATCCGGGTATTTGCTGATGATGTTGTTGAGAGCTCTGAGGTAACAACGGGTGTGACCAGAATTGGGGATTATGAACTTCATGATCTTGTGTTGTTAGATAATATGAGCTTTGGCGTAATTATACGTGTAGAGAGTGAGGCTTTTCAGGTTCTTAAGGGTATTCCTGATAGACCTGAGGTTGATATTGTGAAGCTGAGGGAAATAAAAAGTAAAATAGACAAGAAAATCAGTGTTCAAGATCGATTCAATAACACCATTTCCTCCAAAGACATAGTGAGGATTCTTGAAGGTCCTTGTAAGGGAAAACAAGGTCCAGTGGAGCACATTTACAGAGGAGTCCTGTTCATTTATGATCGCCATCACTTGGAACATGCAGGCTTTATATGTGCTAAATCACAGTCTTGTGTTGTTGTGGGTGGATCCCGAACTAATGGAAATAGAAACGGTAATTCATACTCTAGGCTCGCTGGCCTTGGGACTCCACCTCGTTTTCCTCAGTCACCTAAAAGATTTTCCAGAGGAGGTCCCCCCAATGATGCTGGGGGAAGACATCATAGAGGTGGGAGAGGGCATCATGATGGGCTGGTTGGATCAACAGTGAAAGTCCGGCAGGGTCCTTATAAGGGTTACCGAGGGCGTGTTGTTGAAATAAAGGGCCAATTGTTGACCGCAATTTTATCTCAGATAATGTGGCTGTTTCGACCCCCTATCGGTAATGATTCATCTAGATATGGTATGGGAAGTGAAACTCCCATGCATCCTTCTCGAACTCCCCTTCATCCGTACATGACCCCAATGAGAGATATTGGAACAACACCAATTCATGATGGCATGAGGACACCTATGCGAGATCGAGCATGGAATCCATATGCACCCATGAGTCCGTCAAGGCATATGGTGAGGGGTGGTAGTGTAATAGTGAAGTCCTGTACATGGACCACGCTAGAGGCAATTGTAATGGTGCTTGTGTTGTATATTGCTGCTCTAGGAACTCATTTGATGTGGAAAACAACTTTTGGCTGTGGGATAAATCTAGATAACTGGGAGGAAGGGAACCCTGGAACTTGGGGAGCGAGTCCACAGTACCAGCCAGGAAGCCCTCCTTCACGAACTTACGAAGCTCCAACTCCTGGTTCTGGTTGGGCCAACACTCCTGGTGGCAGTTACAGTGATGCCGGTACCCCTCGGGATAGTGGTTCAGCCTATGCAAATGCTCCAAGCCCATACTTGCCTTCAACTCCTGGTGGACAGCCCATGACACCAAATTCAGCATCCTATCTTCCTGGCACTCCTGGTGGGCAGCCAATGACACCGGGCACAGGTGGTCTGGATATGATGTCTCCTGTTATAGGTGGTGATACCGAAGGACCATGGTACATGCCAGACATATTGGTCAATGTCCGGAGGTCAGGAGATGATCCCATCATGGGAGTAATTCGTGAGGTGCTTCCGGATGGTACGTGTAGGGTAGGTCTTGGGTCAAGTGGAAACGGTGAAACGATAACAGCCCCTTCTAGCGACATAGAAGTCATTGTTCCTAGGAAATCCGACAAGATCAAGATAATGGGTGGTGGTGCACTGCGTGGTGCCACTGGCAAGTTGATCGGTGTAGATGGCACCGATGGAATTGTGAAGGTAGACGACACTCTTGATGTTAAGATTTTGGATTTAGATATTCTTGCAAAACTAGCCCAACCATGA 3234 45.58 MPRRRDDDDDDIDADEEEYEEEMEQPLDDEEEEEDRSSRKRRRSDFIDDVADEDEDEEEEDEDEDEDFGGGARRRRAKRPSGSQFLDIEAEVDSDDDEEEDDAEDDFIVDNAAEDIPDEDENRRMHRRPLLPREDEQEDVEALERRIQARYARSNHQEYDEETTEVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDRGPEMQIRSAIALDHLKNYIYIEADKEAHVREACKGLRNIYSQKVMLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSMKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGIPDRPEVDIVKLREIKSKIDKKISVQDRFNNTISSKDIVRILEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICAKSQSCVVVGGSRTNGNRNGNSYSRLAGLGTPPRFPQSPKRFSRGGPPNDAGGRHHRGGRGHHDGLVGSTVKVRQGPYKGYRGRVVEIKGQLLTAILSQIMWLFRPPIGNDSSRYGMGSETPMHPSRTPLHPYMTPMRDIGTTPIHDGMRTPMRDRAWNPYAPMSPSRHMVRGGSVIVKSCTWTTLEAIVMVLVLYIAALGTHLMWKTTFGCGINLDNWEEGNPGTWGASPQYQPGSPPSRTYEAPTPGSGWANTPGGSYSDAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGGDTEGPWYMPDILVNVRRSGDDPIMGVIREVLPDGTCRVGLGSSGNGETITAPSSDIEVIVPRKSDKIKIMGGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLDILAKLAQP 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36011369 36026169 + Maker00008785 Lcy10g1309 644820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1309 1077 PIRSF Spt5 843 1077 IPR017071 GO:0006357(InterPro)|GO:0032784(InterPro)
Lcy10g1309 1077 PIRSF Spt5 737 825 IPR017071 GO:0006357(InterPro)|GO:0032784(InterPro)
Lcy10g1309 1077 PIRSF Spt5 3 741 IPR017071 GO:0006357(InterPro)|GO:0032784(InterPro)
Lcy10g1309 1077 Gene3D - 475 524 IPR014722 -
Lcy10g1309 1077 CDD KOW_Spt5_6 1017 1075 IPR041980 -
Lcy10g1309 1077 Gene3D - 268 310 IPR014722 -
Lcy10g1309 1077 SMART kow_9 268 295 IPR005824 -
Lcy10g1309 1077 SMART kow_9 1023 1051 IPR005824 -
Lcy10g1309 1077 SMART kow_9 704 731 IPR005824 -
Lcy10g1309 1077 SMART kow_9 596 623 IPR005824 -
Lcy10g1309 1077 SMART kow_9 420 447 IPR005824 -
Lcy10g1309 1077 SMART kow_9 472 499 IPR005824 -
Lcy10g1309 1077 MobiDBLite consensus disorder prediction 49 67 - -
Lcy10g1309 1077 CDD KOW_Spt5_2 421 471 IPR041975 -
Lcy10g1309 1077 CDD KOW_Spt5_3 472 522 IPR041976 -
Lcy10g1309 1077 PANTHER SUPPRESSOR OF TY 5 55 734 IPR039659 GO:0003729(PANTHER)|GO:0006357(InterPro)|GO:0006368(PANTHER)|GO:0032044(PANTHER)|GO:0032784(InterPro)
Lcy10g1309 1077 FunFam Transcription elongation factor SPT5 475 524 - -
Lcy10g1309 1077 CDD NGN_Euk 179 261 IPR039385 -
Lcy10g1309 1077 MobiDBLite consensus disorder prediction 865 918 - -
Lcy10g1309 1077 MobiDBLite consensus disorder prediction 9 32 - -
Lcy10g1309 1077 MobiDBLite consensus disorder prediction 657 708 - -
Lcy10g1309 1077 SUPERFAMILY Translation proteins SH3-like domain 464 523 IPR008991 -
Lcy10g1309 1077 MobiDBLite consensus disorder prediction 117 140 - -
Lcy10g1309 1077 MobiDBLite consensus disorder prediction 865 952 - -
Lcy10g1309 1077 Gene3D - 689 737 IPR014722 -
Lcy10g1309 1077 MobiDBLite consensus disorder prediction 33 48 - -
Lcy10g1309 1077 Pfam Early transcription elongation factor of RNA pol II, NGN section 179 260 IPR005100 -
Lcy10g1309 1077 ProSitePatterns Ribosomal protein L24 signature. 424 441 IPR005825 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lcy10g1309 1077 Pfam KOW motif 707 731 IPR005824 -
Lcy10g1309 1077 MobiDBLite consensus disorder prediction 1 140 - -
Lcy10g1309 1077 Gene3D - 415 472 IPR014722 -
Lcy10g1309 1077 CDD KOW_Spt5_4 600 642 IPR041977 -
Lcy10g1309 1077 FunFam Transcription elongation factor SPT5 268 310 - -
Lcy10g1309 1077 FunFam Transcription elongation factor SPT5 159 261 - -
Lcy10g1309 1077 Coils Coil 133 153 - -
Lcy10g1309 1077 Gene3D - 159 261 IPR036735 GO:0006354(InterPro)
Lcy10g1309 1077 Pfam Spt5 transcription elongation factor, acidic N-terminal 85 173 IPR022581 -
Lcy10g1309 1077 MobiDBLite consensus disorder prediction 927 941 - -
Lcy10g1309 1077 FunFam Transcription elongation factor SPT5 415 472 - -
Lcy10g1309 1077 CDD KOW_Spt5_1 272 309 IPR041973 -
Lcy10g1309 1077 SMART nusgn_4 177 263 IPR006645 GO:0006354(InterPro)|GO:0140673(InterPro)
Lcy10g1309 1077 MobiDBLite consensus disorder prediction 89 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1309 K15172 - - csv:101204562 1750.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1309 Lcy-Chr10:36011369 Lcy10g1726 Lcy-Chr10:41626382 8.36E-59 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39