Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1313 ATGAGGCTGTTTGGAGGGATGGAGCGGGGGAGAAGCCTTGGTGCTGCGTGGGGATGGCTTTTCGTCGGCCTGTGGGTGGCAGTAAAGGGGTTCCCAGCTGAGGACCTGGTCGGGAGGCTGCCCGGCCAGCCAATGGTCGGTTTCAGACAATTTGCAGGCTATGTCGATGTCGATGTCGATGCCGGGAGAAGCTTGTTTTACTACTTTGCTGAAGCTCAGCAAGATCCCCATCTCCTGCCCCTCACTCTCTGGCTCAATGGAGGTCCAGGTTGCTCCTCCGTTGGCGGGGGTGCCTTTACAGAGTTGGGGCCCTTTTATCCTACAGGTGATGGTCGAGGCCTTCGAAGAAATTCCATGTCCTGGAATAAAGCCTCTAATCTACTGTTTGTGGAGTCTCCTGCTGGGGTAGGATGGTCATACTCAAACACAACCTCAGACTACACATGTGGCGATGCCTCCACTGCCAGGGACATGCTCACCTTTATGTTGAAATGGTATGACAAGTTTCCAGCTTTCAGAGATAGGCCATTTTTCCTTACAGGAGAAAGTTATGCAGGCCATTACATTCCGCAGCTAGCTGAAGCTATACTGGACTACAACATTCGCTCAAAGGGCTTCAAGTTCAATATCAAGGGAGTTGCTATTGGGAACCCATTACTTAATCTGGACAGGGATGCACCAGCAACCTACGAATTCTTTTGGTCTCATGGGATGATTTCCGATGAAGTTGGGCTTGCAATCATGAGAGAGTGTGATTTTGATGATTATGTTTTGACAAATCCACACAATGTAAGTAAATCATGCAACGAAGCCTTAGCCGATGCCAACGGCATCGTTGGCGAGTACATTAACAACTATGATGTTCTTTTGGATGTCTGCTACCCTTCCATTGTCGAGCAAGAGCTCAGATTGAAGAAACTGGCAACTAAAATAAGCATGGGAGTTGATGTGTGCATGACCTACGAAAGGCATTTTTATTTCAATTTACCAGAAGTTCAAAAGGCTCTTCATGCCAATCGTACTAATTTGCCTTATGAATGGTCCATGTGCAGTGACGGAGATGAGGATTCAGTAGTGCCACTACTGGGGTCTAGGACGTTGGTCCGGGAGCTGGGTCATGACCTTAAATTCAAGGTCACAGTACCCTACGGAGCTTGGTTTCACAAGGGCCAGGTCGGCGGGTGGGCCATCGAGTACGGCAATATACTGACCTTCGCAACGGTTCGAGGGGCGTCCCATATGGTTCCCTACGCCCAGCCCTCCAGGGCTCTGCATTTGTTCTCTTCATTTGTTCGAGGGAGGAGGCTGCCCAATTCTACTCGCCCTTCCATTGATGATTAA 1341 49.52 MRLFGGMERGRSLGAAWGWLFVGLWVAVKGFPAEDLVGRLPGQPMVGFRQFAGYVDVDVDAGRSLFYYFAEAQQDPHLLPLTLWLNGGPGCSSVGGGAFTELGPFYPTGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYTCGDASTARDMLTFMLKWYDKFPAFRDRPFFLTGESYAGHYIPQLAEAILDYNIRSKGFKFNIKGVAIGNPLLNLDRDAPATYEFFWSHGMISDEVGLAIMRECDFDDYVLTNPHNVSKSCNEALADANGIVGEYINNYDVLLDVCYPSIVEQELRLKKLATKISMGVDVCMTYERHFYFNLPEVQKALHANRTNLPYEWSMCSDGDEDSVVPLLGSRTLVRELGHDLKFKVTVPYGAWFHKGQVGGWAIEYGNILTFATVRGASHMVPYAQPSRALHLFSSFVRGRRLPNSTRPSIDD 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36033749 36037784 - Maker00008350 Lcy10g1313 644824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1313 446 Pfam Serine carboxypeptidase 41 352 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy10g1313 446 Pfam Serine carboxypeptidase 353 433 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy10g1313 446 ProSitePatterns Serine carboxypeptidases, histidine active site. 403 420 IPR033124 GO:0004185(InterPro)
Lcy10g1313 446 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy10g1313 446 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy10g1313 446 PRINTS Carboxypeptidase C serine protease (S10) family signature 403 416 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy10g1313 446 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy10g1313 446 SUPERFAMILY alpha/beta-Hydrolases 26 439 IPR029058 -
Lcy10g1313 446 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185(InterPro)
Lcy10g1313 446 Gene3D - 318 351 - -
Lcy10g1313 446 Gene3D alpha/beta hydrolase 32 294 IPR029058 -
Lcy10g1313 446 FunFam Carboxypeptidase 332 433 - -
Lcy10g1313 446 Gene3D - 352 435 - -
Lcy10g1313 446 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 353 430 IPR001563 GO:0004185(PANTHER)|GO:0004185(InterPro)|GO:0006508(InterPro)
Lcy10g1313 446 FunFam Carboxypeptidase 31 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1313 K16297 - - csv:101207193 830.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1313 Lcy-Chr10:36033749 Lcy11g0974 Lcy-Chr11:29452095 1.29E-121 dispersed
Lcy10g1313 Lcy-Chr10:36033749 Lcy9g0928 Lcy-Chr9:31248343 1.28E-262 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1215 . . . . . . . . Cmo04g02540 Cmo15g00631 . Cma09g01090 . . Sed11g1328 Cpe06g00890 . Bhi04g01820 Tan11g1189 Cmetu01g2322 . Hepe02g2767 . Lcy10g1313 Cla08g00662 Cam08g1093 Cec08g0678 Cco08g0787 Clacu08g0798 . Cre08g0601 . Cone7ag1433 . Cone20ag0399 . . . Cme03g00398 . Blo18g00222 . . . . Bma01g00874 . . . Cmo09g01099 . . Car04g02338 Car09g00988 Cpe01g02099 . Bhi09g01511 . . . . Mch11g1423 . Cla09g00918 Cam09g0970 Cec09g0975 Cco09g0981 . . Cre09g0939 Lsi08g00522 . Chy03g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002124 1 2 1 1 1 2 3 2 2 2 2 2 1 2 3 3 2 3 2 2 2 2 2 2 2 2 3 7 2 2 65