Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1328 ATGATGCTGCACTCGTCTTCTTCCCCGATCTTCTTCCTTCATTTCTTCTTCTTGATCCTCTCCAATTCTGCCCCTCTTTCTCTCTCTTTCTTGCCCGATCAAAACGTTACCCTCTCCGGTGACGCCCATCTCAGAAACAACGCCATTCTTCTCACTCAAGAACTCAACTGCCTTCCCTTTTCTTCTAATTCCCCTTCCTCCCCTTCCTCTTCCGGCGTCGGAACCGCCTTCTACGTAAACCCTATTCGCTTTCTTGATTTCTCCACCAATTCCACCGCTTCTTTCTCCTCTACTTTCTCCCTCTCCATCGTCCCCACCCCTCTTTGCCCCTTCGGCGACGGAATCGCCTTTCTCATCACCTCCGATTCCAAGTCTTTCAGCCGCTCTCATGGGTACATGGGCCTTCCCGACCCCTCTCCAAATTCCCACTTCTCTTTCATCGCTGTTGAATTCGACACCAATTTCGACCCTGATCTCGGGGACATTAATGACAACCATCTCGGCCTTGATGTCAACTCAGCTACCTCTCTGACTTCTGTGGATTTTGGGTCGATTGGCATTGTTCTTAAAAATGGGAGGGAGGTTACTGCTTGGATTGAGTACAGGGATGACTCGAAGATGATCCAGGTCTGGGTTGGGTACTCGCAGACTCGGCCTGCCGATCCTTTTCTGGTTGCGCAGATTGACCTTTCCAAGCAGTTTAAGGAGTTTATGTATGTGGGGTTCTCTGCTTCTAATGGTCAGGGCTCTGCTCTTTACATTGTTGATAGATGGCGGTTTAGAACTTTTGGGTTGGTCCCTTCTTTGACTCCTGTTGATACCATTAACGAAGGGGACTGTTTTATGTGCTCGTCGGAGGATTCAAGTGCCAGCAACAGTCATGTCGTCGATGCTCGCAAAGGGAGGAAGAAGATTGGAGAGACGACCCTTGGATTGGGAGGTTTAGCTGCGTTTGTTTGCTCTATTATTGCCATTGTTGGTTTGGTTAGTTTTGTTTTGATAAAGAAGTTGAGAGGTAGAATGTGCAGAGGCAGGGCAGCCCTCAGAACCTGTCAGGTTGAGATGAACAGAGTTCCAATGAGATTGTCTCTTGGGGAGATAAAGTTGGCTACAATGGGGTTTAATCAAAACAGAGTTGTTGGGGAAGGTGGTTCTGCAACTGTTTACAAAGGGTCTCTTTCATCAGGTGGAGAAGTGGCTGTTAAACGATTCGAACGAGGCACGGCGAACAATCGTCTGTGCAATCCGTTCACCACGGAGTTTGCAACAATGGCGGGATGCTTGAGACACAAGAATTTAGTTCAGCTTCATGGATGGTGCTGTGAGGCCAATGAGTTGGTGCTTGTTTATGAGTACTTGCCCAATGGAAGCCTTGCCAAACTTCTTCACAAGAGCTCCTCCAATTCACAATTTGTCCTTCCTTGGAAGAAGAGGTTTTCCATAGTTCTTGGGGTTGCCTCTGCATTGACATATCTTCATGAAGAATTTAGCCGAACCGTAAACCGAATTTCTCCTTTCCAACAACTGCTTATAAAACAGCACGGCGCCGCCATGGAGATAGCAAAGGCTTCCAAATGTTGCAAATGA 1587 47.7 MMLHSSSSPIFFLHFFFLILSNSAPLSLSFLPDQNVTLSGDAHLRNNAILLTQELNCLPFSSNSPSSPSSSGVGTAFYVNPIRFLDFSTNSTASFSSTFSLSIVPTPLCPFGDGIAFLITSDSKSFSRSHGYMGLPDPSPNSHFSFIAVEFDTNFDPDLGDINDNHLGLDVNSATSLTSVDFGSIGIVLKNGREVTAWIEYRDDSKMIQVWVGYSQTRPADPFLVAQIDLSKQFKEFMYVGFSASNGQGSALYIVDRWRFRTFGLVPSLTPVDTINEGDCFMCSSEDSSASNSHVVDARKGRKKIGETTLGLGGLAAFVCSIIAIVGLVSFVLIKKLRGRMCRGRAALRTCQVEMNRVPMRLSLGEIKLATMGFNQNRVVGEGGSATVYKGSLSSGGEVAVKRFERGTANNRLCNPFTTEFATMAGCLRHKNLVQLHGWCCEANELVLVYEYLPNGSLAKLLHKSSSNSQFVLPWKKRFSIVLGVASALTYLHEEFSRTVNRISPFQQLLIKQHGAAMEIAKASKCCK 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36143625 36145818 - Maker00008744 Lcy10g1328 644839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1328 528 PANTHER - 39 500 IPR050528 GO:0002229(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Lcy10g1328 528 ProSiteProfiles Protein kinase domain profile. 374 528 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1328 528 Gene3D Transferase(Phosphotransferase) domain 1 453 502 - -
Lcy10g1328 528 FunFam L-type lectin-domain containing receptor kinase S.6 342 452 - -
Lcy10g1328 528 ProSitePatterns Protein kinases ATP-binding region signature. 380 402 IPR017441 GO:0005524(InterPro)
Lcy10g1328 528 Gene3D Phosphorylase Kinase; domain 1 339 452 - -
Lcy10g1328 528 SUPERFAMILY Protein kinase-like (PK-like) 356 496 IPR011009 -
Lcy10g1328 528 Pfam Protein tyrosine and serine/threonine kinase 376 495 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1328 528 Pfam Legume lectin domain 30 262 IPR001220 GO:0030246(InterPro)
Lcy10g1328 528 ProSitePatterns Legume lectins beta-chain signature. 147 153 IPR019825 -
Lcy10g1328 528 Gene3D - 27 267 - -
Lcy10g1328 528 CDD lectin_legume_LecRK_Arcelin_ConA 29 264 IPR001220 GO:0030246(InterPro)
Lcy10g1328 528 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 265 IPR013320 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1328 Lcy-Chr10:36143625 Lcy5g0276 Lcy-Chr5:2586126 5.09E-75 dispersed
Lcy1g2699 Lcy-Chr1:51812462 Lcy10g1328 Lcy-Chr10:36143625 3.73E-19 dispersed
Lcy10g1328 Lcy-Chr10:36143625 Lcy6g1817 Lcy-Chr6:37299071 5.43E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65391 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1328 - - - 0.0