Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1341 ATGGCGGATATGGATTTCCTTGAGGGCGTTGGGGAAAGTTCTTCGCCGCCTCGAACCTTCGCTGCCTTCTGTGGAGGCGTCCACGATGTTCGGAACGATGTTTATACTCGCTTGCTTGAGACTGGACATGACGAGGCCGTTTCTAATCCCGAATTTCGCGACAACTTGGATGCTCACTTCAATCGCTTGCCTCCGAGTTATGGACTTGATGTTAACATGGAGAAGGTGGAAGATGTTTTGTTACATCAAAATCTTCTTTCCCTAGCAAAGGATCCAGAGAAGTGCCCTGTTTACCACATTCGCTTTCTGGAGCACGTAAGTACTAAATCAGATGGCAATGATGATCACGAACTTGATAGTATTCTTTTAAGTGGTTCATCTAATGAAGCAGCTGATAGAAGACTAACAATGTCACACAAGAGAACTAGAGGCAATATAATTGACTTTGAGCCTTGTTCCAAGCTTGAGGACTTAAATTTGGATGTTAGAAAGAACTTGAAGGCCATGGATGGGAGATATCATATGGATAAATTTTCCAAAAGGCAGGGGATTTCACATGTTCCAATACACGAAGTGATATTTTCAACTACTGACAAGCCTAAGCTTCTTAGCCAGCTTTCTGCTTTGCTCTCTGATATAGGACTTAACATTCGAGAAGCACACGTGTTTTCGACATCTGATGGTTACTCCTTGGATGTATTTGTGGTGGATGGATGGCCTGTCAAGGAAACTGATGGCTTGTATGAAGCTATGGAAAAAGCAGTTGCTAGATATGAGGGGTCATGGTCTGGTTCTTCACATTCTCATTCAGCAGTCAAGAAAGCATTAGATGCCCAGGCAAAACCAGCAGATTGGGAAATAGATAGACGGTTACTGAAGATAGGTGAAAGAATTGCATCTGGATCTTGTGGTGATTTGTATCATGGATTATATCTTGGTCAAGATGTAGCTGTCAAGATATTAAGATCTGAAGATCTAAATGATGATTTAGAGGATGAATTCAATCAAGAAGTGGCTATTCTCAGGAAGGTCCAGCATAAAAATGTAGTACGTTTTATAGGTGCATGTACAAACTCTCCACATTTGTGTATTGTAACAGGATCTTCTTCTGTAGTTTACATAAGACTACTTAGTCTTCCTCATGCAATACTTGATGAGATGATATTAGACAGCACAAGGAAGCGAAGGTTCAACATCGACATGAGGGAGTATATGCCAGGAGGGAGTCTTTATGATTACTTGCACAAGAATCATTGCGTGTTAAAGCTCTCACAACTCCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGCATACTTACATTTAAATAACATTATTCATAGAGACTTGAAGACAGCAAATCTGCTAATGAACACTCAACATCGGTTGTACACACTTATTATTCCTTCAAAGTTGCAATGTAGTGTGGAATGTTTGGAGTTGGATTTGCTTGTGTTTCCTGCGTTAAGCATTTGTGTAATAAATCATCTGCCATATGATCAGAAAGCAGATATTTTCAGTTTTGCGATTGTGCTGTGGGAACTAACAACAGCAAAGGTTCCTTATGATTCCATGACACCACTACAAGCCGCACTTGGAGTAAGACAGGGACTACGTCCAGATCTTCCCAAAAATGTGCACCCTAAATTGTTGGATTTGATGCAAAGATGTTGGGATGCAGAACCTGTAAATCGGCCACCATTTACCGAGATAAAAGCTGAACTTGAAAATCTCCTTGAAGAAGTTCAGATGTGTACAAAATATGAAGAAAATTGTGCAGCAGTTAATGGCAGCTGA 1797 40.62 MADMDFLEGVGESSSPPRTFAAFCGGVHDVRNDVYTRLLETGHDEAVSNPEFRDNLDAHFNRLPPSYGLDVNMEKVEDVLLHQNLLSLAKDPEKCPVYHIRFLEHVSTKSDGNDDHELDSILLSGSSNEAADRRLTMSHKRTRGNIIDFEPCSKLEDLNLDVRKNLKAMDGRYHMDKFSKRQGISHVPIHEVIFSTTDKPKLLSQLSALLSDIGLNIREAHVFSTSDGYSLDVFVVDGWPVKETDGLYEAMEKAVARYEGSWSGSSHSHSAVKKALDAQAKPADWEIDRRLLKIGERIASGSCGDLYHGLYLGQDVAVKILRSEDLNDDLEDEFNQEVAILRKVQHKNVVRFIGACTNSPHLCIVTGSSSVVYIRLLSLPHAILDEMILDSTRKRRFNIDMREYMPGGSLYDYLHKNHCVLKLSQLLKFAIDVCEGMAYLHLNNIIHRDLKTANLLMNTQHRLYTLIIPSKLQCSVECLELDLLVFPALSICVINHLPYDQKADIFSFAIVLWELTTAKVPYDSMTPLQAALGVRQGLRPDLPKNVHPKLLDLMQRCWDAEPVNRPPFTEIKAELENLLEEVQMCTKYEENCAAVNGS 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36413953 36429509 - Maker00008698 Lcy10g1341 644852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1341 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1341 598 SUPERFAMILY ACT-like 190 259 IPR045865 -
Lcy10g1341 598 Pfam Protein tyrosine and serine/threonine kinase 402 575 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1341 598 Pfam Protein tyrosine and serine/threonine kinase 292 366 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1341 598 PANTHER SERINE-THREONINE PROTEIN KINASE 262 579 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy10g1341 598 PRINTS Tyrosine kinase catalytic domain signature 402 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1341 598 PRINTS Tyrosine kinase catalytic domain signature 503 525 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1341 598 PRINTS Tyrosine kinase catalytic domain signature 439 457 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1341 598 PRINTS Tyrosine kinase catalytic domain signature 546 568 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1341 598 Gene3D Phosphorylase Kinase; domain 1 280 368 - -
Lcy10g1341 598 Gene3D Transferase(Phosphotransferase) domain 1 384 584 - -
Lcy10g1341 598 ProSiteProfiles Protein kinase domain profile. 292 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1341 598 FunFam Serine/threonine-protein kinase isoform 1 282 370 - -
Lcy10g1341 598 CDD STKc_MAP3K-like 298 575 - -
Lcy10g1341 598 SUPERFAMILY Protein kinase-like (PK-like) 281 580 IPR011009 -
Lcy10g1341 598 ProSiteProfiles ACT domain profile. 191 265 IPR002912 -
Lcy10g1341 598 SMART serkin_6 292 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1341 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1341 Lcy-Chr10:36413953 Lcy3g0858 Lcy-Chr3:30969604 6.52E-119 dispersed
Lcy10g1341 Lcy-Chr10:36413953 Lcy6g2333 Lcy-Chr6:48118881 2.76E-112 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1256 . . . . . . . . Cmo04g02557 Cmo15g00611 . . . . . . Cpe13g00675 Bhi04g01791 . . . . . Lcy10g1341 Cla08g00702 . . . . . . . . Cone17ag0791 Cone20ag0386 . . . Cme03g00342 . Blo18g00215 . Bda13g01522 Bpe02g01606 . Bma01g00863 Bma02g00273 . . . . . Car05g00693 Car15g00559 Cpe01g02111 . . . . . . . . . . . . . . . Lsi08g00545 . Chy03g00525 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004128 3 1 1 5 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65392 None None None None Lcy PK