Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1345 ATGGCTGCAACTTCTGGTGCTGTGCTTAATGGCTTGGGCTCACCCTTCCTCCGTGGAGCTAGCAGAACCCGGACCTTGCTTGCTGGACCCAGAGGCGGTGTCAATGTCGCCGGCTCTCGCAAGCTCGTCATCGTCGCCGCTGCTCAGCCCAAGAAGTCTTGGATCCCCGGCGTTCGAGGGGGCGGCAACTTCGTCGACCCAGAATGGCTAGATGGCTCGTATGTCTCTCTTACTTTCTCCAAACTTCCAGGCGACTACGGCTTCGACCCTCTGGGGTTGGGGAAGGACCCAGCATTTCTGAAGTGGTACAGAGAGGCAGAGCTGATCCACGGCCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCGTAGGGCAAGCCTGGAGTGGAATCCCATGGTTCGAAGCCGGAGCCGATCCGAGCGCAGTCGCCCCATTCTCCTTCGGAACACTGCTCGGAACCCAGCTTCTGCTAATGGGATGGGTGGAGAGCAAGCGGTGGGTGGATTTCTTCAACCCAGAGTCGCAGTCCGTCGAATGGGCGACGCCATGGTCGAGGACGGCAGAGAACTTCGCAAACGCGACGGGAGAACAGGGGTATCCCGGAGGAAAATTCTTCGATCCGTTGGGATTTGCAGGAAGTATTAAGGATGGGGTTTACATTGCGGACTCGGAGAAGTTGGAGAGATTGAAGTTGGCGGAGATCAAGCATGCTAGGATCGCCATGTTAGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCGTTGGGTGCCCTTGGATTGTAA 792 57.32 MAATSGAVLNGLGSPFLRGASRTRTLLAGPRGGVNVAGSRKLVIVAAAQPKKSWIPGVRGGGNFVDPEWLDGSYVSLTFSKLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPSAVAPFSFGTLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGSIKDGVYIADSEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36589985 36591897 + Maker00008406 Lcy10g1345 644856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1345 263 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 52 261 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Lcy10g1345 263 Gene3D Chlorophyll a/b binding protein domain 67 262 - -
Lcy10g1345 263 Pfam Chlorophyll A-B binding protein 81 251 IPR022796 -
Lcy10g1345 263 SUPERFAMILY Chlorophyll a-b binding protein 66 263 - -
Lcy10g1345 263 FunFam Chlorophyll a-b binding protein, chloroplastic 67 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1345 Lcy-Chr10:36589985 Lcy9g0892 Lcy-Chr9:29874696 1.71E-122 dispersed
Lcy10g1345 Lcy-Chr10:36589985 Lcy5g2537 Lcy-Chr5:48148995 4.75E-26 transposed
Lcy10g1345 Lcy-Chr10:36589985 Lcy2g0568 Lcy-Chr2:4882718 6.77E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1345 K08917 - csv:101204705 482.256