Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1347 ATGATGGATTTGAACTTCACCGCCCGGAAACCGCCGCAGACGGCGGTGAGGATGGACATAGAACAGATGCCGGAGGCTCCACAGCGTGCTTATCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTCGCTAATTTCGAGGATCTTCTTCTCTTCGACCCTCCCGACCTCGACTTGTCATCTTCCCTTCCTTCTCCTTCTCCGTCGCCGGCGGGGGCTCGTGTGGCCGTCGATTCCTTCAATTCCAAGTCCCCTGAAGACGCCTCTGCCTCGAAACCTAGGGCTGGTAACGGCAACTCCGCTTCCTTCGGCGCTCACTGCCGGAGCTTTTCGATGGATTCCGACTTCTTCGAGGGCTTGGGGATGGCCGGAGATGGCAGCGACGGTGAGGTACTCGGCGGGAGAGTGACGGTTGGGGAGAAGAAGATGGGCCGCCATAGGCATAGCAATTCCATGGATGGCTCTTTGACGTCCTCGTTTGAAGCTGAGTCCACCGGCGTAATTGATTGCTCCAGGAAGGCTATGGCGCCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATCCTGGCGAATAGACAATCTGCTGCACGGTCCAAGGAGAGGAAAATACGTTACACTAATGAACTGGAGAAGAAGGTGCAGATGCTTCAATCAGAAGCGACTTCCCTGTCTGCACAGGTCACAGTTTTACAGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGGCTGCAGGCCATGGAGCAGCAAGCGCAACTCAGAGATGCTCTGAATGAGACACTGAGGGAGGAAGTGCAGCGGCTCAAGATAGCTGCTGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTGGAGGAGGGCTACCTCCTCCATTCCCTCCTCTCCAGCCATCCCTGCTTCAGTTTAGTAACTCTCAGAATCATCAACAGCAACAGCTGCTTCACATGTCTCAGCCTGATGCTTGA 1002 54.19 MMDLNFTARKPPQTAVRMDIEQMPEAPQRAYHHRRSHSDTSFRFANFEDLLLFDPPDLDLSSSLPSPSPSPAGARVAVDSFNSKSPEDASASKPRAGNGNSASFGAHCRSFSMDSDFFEGLGMAGDGSDGEVLGGRVTVGEKKMGRHRHSNSMDGSLTSSFEAESTGVIDCSRKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDTTGLTTENRELKLRLQAMEQQAQLRDALNETLREEVQRLKIAAAQLPVANGNSFNIGGGLPPPFPPLQPSLLQFSNSQNHQQQQLLHMSQPDA 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36623456 36625637 - Maker00008815 Lcy10g1347 644858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1347 333 FunFam Transcription factor VIP1 189 242 - -
Lcy10g1347 333 MobiDBLite consensus disorder prediction 297 333 - -
Lcy10g1347 333 Pfam bZIP transcription factor 190 246 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1347 333 SUPERFAMILY Leucine zipper domain 190 242 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1347 333 Gene3D - 189 242 - -
Lcy10g1347 333 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1347 333 Coils Coil 241 285 - -
Lcy10g1347 333 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 325 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy10g1347 333 MobiDBLite consensus disorder prediction 82 101 - -
Lcy10g1347 333 CDD bZIP_plant_RF2 191 240 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1347 333 Coils Coil 213 233 - -
Lcy10g1347 333 SMART brlzneu 186 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1347 333 MobiDBLite consensus disorder prediction 310 333 - -
Lcy10g1347 333 MobiDBLite consensus disorder prediction 83 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1347 Lcy-Chr10:36623456 Lcy7g1073 Lcy-Chr7:11487583 4.20E-50 dispersed
Lcy3g0949 Lcy-Chr3:32928711 Lcy10g1347 Lcy-Chr10:36623456 3.05E-38 transposed
Lcy4g0348 Lcy-Chr4:4423904 Lcy10g1347 Lcy-Chr10:36623456 2.21E-94 transposed
Lcy10g1347 Lcy-Chr10:36623456 Lcy9g0965 Lcy-Chr9:32325539 4.84E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18987 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1347 K20557 - csv:101215277 406.757