Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1348 ATGGATCTCTCAAAAATGGAGCCCAACAAGTTAAATTTAAGCAATTTGGAACAACAACCCGGGACGTTGGAGATCCAAACCAAGGAATTCGACTACTCGAAACGCGCGCAATGGCTACGCGCCGCCGTGCTTGGTGCCAACGACGGGCTCGTCTCGACCGCATCGCTCATGATGGGAGTTGGAGCTGTGAAACAAGACATCAAGGCCATGATCCTCACCGGCTTCGCCGGCTTGGTCGCTGGCGCCTGTAGTATGGCCATCGGCGAGTTCGTGTCCGTCTACTCGCAGTTGGACATTGAAGTGGCTCAAATGGAGAGAGAGAAATTACAAAGAAGTAATTTGGAAGGACAAGGACAAGGTCAAGAGAGCCAAGATAGAGAGAAACTGCCGAACCCACTCCAAGCCGCCGCGGCCTCCGCCTTGGCTTTCTCTCTAGGAGCAATGGTGCCATTGTTGGCAGCTTCGTTTATAAGAGAGTACACGGTAAGGCTCGTGGTGGTTGTCGCAGCGGTGACGTTGGCTCTAGCCGTGTTCGGATGGTTGGGTGCCATCCTTGGTAAAGCATCGCCAATCAAATCAGCCATCAGAGTGTTGTTTGGAGGATGGCTAGCCATGGCCATAACCTTCGGCTTAACAAAGCTAATCGGAGCAAGTGGACTCTAA 663 52.49 MDLSKMEPNKLNLSNLEQQPGTLEIQTKEFDYSKRAQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEVAQMEREKLQRSNLEGQGQGQESQDREKLPNPLQAAAASALAFSLGAMVPLLAASFIREYTVRLVVVVAAVTLALAVFGWLGAILGKASPIKSAIRVLFGGWLAMAITFGLTKLIGASGL 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36642003 36642965 + Maker00008500 Lcy10g1348 644859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1348 220 Pfam VIT family 39 115 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Lcy10g1348 220 Pfam VIT family 125 212 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Lcy10g1348 220 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 15 216 IPR008217 GO:0005381(PANTHER)|GO:0005384(PANTHER)|GO:0005384(InterPro)|GO:0006880(PANTHER)|GO:0016020(PANTHER)|GO:0030026(PANTHER)|GO:0030026(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1348 Lcy-Chr10:36642003 Lcy3g0776 Lcy-Chr3:28131881 7.10E-66 dispersed
Lcy10g1348 Lcy-Chr10:36642003 Lcy9g0967 Lcy-Chr9:32416619 1.61E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1348 K22736 - csv:101204048 350.132