Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1353 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGCCAGGCCATTCCAGGGGTAAATCTCATGGACCGGTTCATGAGTTTCATGATGAACCTCTGCTAATCCAGACTAGCCGCTGGGCTAGCCTTCCACCTGAGTTATTATGTGATGTGGTCCGAAGACTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGGAATGTCGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGACATGTGCAAAGAAATTGTCAAAAGTCCCGAGTTCTCCGGGAAAATTACTTTCCCCATCGCATTGAAGCAGCCTGGGCCTCGTGATAGTACTATTCAATGCTTTATCAAGAGGAACAAATCAAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACCTCTACAGAGTATGTTATATCGTTGGCTGCCGACGATATATCAAGATCGAGCAATGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATTATATATGATACACAACCTCCCTACAACAGCAACCAAATCCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCCCCAAAGGTCCCAGCTGGTAGCTACAGCATTGCACAAATTGCATACGAGTTGAATGTATTGGGTACGAGGGGACCGCGGAGGATGCACTGCACCATGTACTCCATCCCAACTTCATCTCTTGAGCCAGGTTGCTCCGTTCCAGGCCAGCCCGAGCTCAATCCTCGTCCCCTCGAAGACTCATTCCGCAGCATCTCATTCTCCAAGTCGATCGATCATTCCACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGCTGATGAAGATGGCGAGGGGAAGGATCGGCCCTTGATTCTCCGAAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTAAATTTTCGGGGGAGGGTGACAGTTGCATCTGTAAAGAATTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAACACCAGTACCGTCGCAGCCGCCTCCGCAGCCCGCCCAACCTACCCATTCGGACCACGACAAGATCATTCTTCAGTTTGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCGTTCCAGGCTTTTGCTATATGTCTGAGCAGCTTTGACACCAAATTGGCATGTGAATAG 1299 48.19 MSFRSILRDVRDGFGSLSRRSFEVRLPGHSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEIVKSPEFSGKITFPIALKQPGPRDSTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLADEDGEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAETPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36683909 36687987 + Maker00008390 Lcy10g1353 644864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1353 432 CDD F-box_AtTLP-like 53 97 - -
Lcy10g1353 432 Gene3D - 48 101 - -
Lcy10g1353 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Lcy10g1353 432 MobiDBLite consensus disorder prediction 368 387 - -
Lcy10g1353 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Lcy10g1353 432 Pfam Tub family 114 427 IPR000007 -
Lcy10g1353 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Lcy10g1353 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Lcy10g1353 432 PANTHER TUBBY-RELATED 47 431 - -
Lcy10g1353 432 FunFam Tubby-like F-box protein 110 432 - -
Lcy10g1353 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Lcy10g1353 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Lcy10g1353 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lcy10g1353 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Lcy10g1353 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lcy10g1353 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Lcy10g1353 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Lcy10g1353 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Lcy10g1353 432 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1353 Lcy-Chr10:36683909 Lcy6g0905 Lcy-Chr6:9221119 1.78E-153 dispersed
Lcy6g0535 Lcy-Chr6:5008947 Lcy10g1353 Lcy-Chr10:36683909 1.29E-240 transposed
Lcy10g1353 Lcy-Chr10:36683909 Lcy9g0979 Lcy-Chr9:32733901 1.20E-247 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18989 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1353 K19600 - csv:101203074 836.639