Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g1353 | ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGCCAGGCCATTCCAGGGGTAAATCTCATGGACCGGTTCATGAGTTTCATGATGAACCTCTGCTAATCCAGACTAGCCGCTGGGCTAGCCTTCCACCTGAGTTATTATGTGATGTGGTCCGAAGACTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGGAATGTCGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGACATGTGCAAAGAAATTGTCAAAAGTCCCGAGTTCTCCGGGAAAATTACTTTCCCCATCGCATTGAAGCAGCCTGGGCCTCGTGATAGTACTATTCAATGCTTTATCAAGAGGAACAAATCAAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACCTCTACAGAGTATGTTATATCGTTGGCTGCCGACGATATATCAAGATCGAGCAATGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATTATATATGATACACAACCTCCCTACAACAGCAACCAAATCCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCCCCAAAGGTCCCAGCTGGTAGCTACAGCATTGCACAAATTGCATACGAGTTGAATGTATTGGGTACGAGGGGACCGCGGAGGATGCACTGCACCATGTACTCCATCCCAACTTCATCTCTTGAGCCAGGTTGCTCCGTTCCAGGCCAGCCCGAGCTCAATCCTCGTCCCCTCGAAGACTCATTCCGCAGCATCTCATTCTCCAAGTCGATCGATCATTCCACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGCTGATGAAGATGGCGAGGGGAAGGATCGGCCCTTGATTCTCCGAAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTAAATTTTCGGGGGAGGGTGACAGTTGCATCTGTAAAGAATTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAACACCAGTACCGTCGCAGCCGCCTCCGCAGCCCGCCCAACCTACCCATTCGGACCACGACAAGATCATTCTTCAGTTTGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCGTTCCAGGCTTTTGCTATATGTCTGAGCAGCTTTGACACCAAATTGGCATGTGAATAG | 1299 | 48.19 | MSFRSILRDVRDGFGSLSRRSFEVRLPGHSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEIVKSPEFSGKITFPIALKQPGPRDSTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLADEDGEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAETPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36683909 | 36687987 | + | Maker00008390 | Lcy10g1353 | 644864 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g1353 | 432 | CDD | F-box_AtTLP-like | 53 | 97 | - | - | |
Lcy10g1353 | 432 | Gene3D | - | 48 | 101 | - | - | |
Lcy10g1353 | 432 | ProSitePatterns | Tub family signature 1. | 347 | 360 | IPR018066 | - | |
Lcy10g1353 | 432 | MobiDBLite | consensus disorder prediction | 368 | 387 | - | - | |
Lcy10g1353 | 432 | ProSitePatterns | Tub family signature 2. | 417 | 432 | IPR018066 | - | |
Lcy10g1353 | 432 | Pfam | Tub family | 114 | 427 | IPR000007 | - | |
Lcy10g1353 | 432 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 432 | IPR025659 | - | |
Lcy10g1353 | 432 | Pfam | F-box-like | 53 | 96 | IPR001810 | GO:0005515(InterPro) | |
Lcy10g1353 | 432 | PANTHER | TUBBY-RELATED | 47 | 431 | - | - | |
Lcy10g1353 | 432 | FunFam | Tubby-like F-box protein | 110 | 432 | - | - | |
Lcy10g1353 | 432 | Gene3D | Tubby Protein; Chain A | 113 | 426 | IPR025659 | - | |
Lcy10g1353 | 432 | PRINTS | Tubby superfamily signature | 389 | 408 | IPR000007 | - | |
Lcy10g1353 | 432 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Lcy10g1353 | 432 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Lcy10g1353 | 432 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Lcy10g1353 | 432 | PRINTS | Tubby superfamily signature | 410 | 432 | IPR000007 | - | |
Lcy10g1353 | 432 | PRINTS | Tubby superfamily signature | 329 | 346 | IPR000007 | - | |
Lcy10g1353 | 432 | PRINTS | Tubby superfamily signature | 347 | 363 | IPR000007 | - | |
Lcy10g1353 | 432 | SUPERFAMILY | F-box domain | 49 | 96 | IPR036047 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1353 | Lcy-Chr10:36683909 | Lcy6g0905 | Lcy-Chr6:9221119 | 1.78E-153 | dispersed | |
Lcy6g0535 | Lcy-Chr6:5008947 | Lcy10g1353 | Lcy-Chr10:36683909 | 1.29E-240 | transposed | |
Lcy10g1353 | Lcy-Chr10:36683909 | Lcy9g0979 | Lcy-Chr9:32733901 | 1.20E-247 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18989 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g1353 | K19600 | - | csv:101203074 | 836.639 |