Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1364 ATGCCATCCAGTCAACGGACCCCACTCCTCATTCTCGCTTCCGTCGCCAGTTTCACCGTCGCTTCCCTCTTCCTCTTCTGCGTCTTCTTCCTCTGCCAGAAGCTCAAGTCCAAGCATCGAACCGCTCGCCAACAGCAAGTTCGCAACCGCGATTTGGATCTCTCCTCCATCTCCGTCGATGAGAGCGCCTCCTTCGATCCTTCTCTCCGATTCTCCATGGCCGAACTCCGAGCCGCCACCAAGAATTTCAGCAACGATTTGATCGTCGGCGATGGCTCCTTCGGCGTCGTCTACAAGGCTCGCCTCTCCTCCGGCGCCACCGTCGCCATCAAGAAGCTTAACCCCGACGCCTTCCAAGGATTCAGAGAATTCCGAGCCGAGATGGAGACTCTCGGAAAACTCCGCCATCGGAACATCGTCAAGATCTTGGGATACTGCGTTTCCGGCTCCGATAGGCTCTTGATCTACGAATTCGTCGAGCGAGGAAGTCTCGATAATTGCTTGTACGAGACCTCGACTTCGGCGGAGGCCGATCAGGATTCCGGATTTTTGCCCTCGCGGCAGCCATTGCCATGGGAGACCAGGTTGAAGATCATGAGGGGCGTTGCCAATGGGCTTTCCTATTTACATGGGCTTCCTCAGCCCATTATCCATAGAGACATTAAGGCCGGCAATGTCTTATTGGACCCCGAATTCGAGGCCCATATTGCGGATTTTGGGCTCGCACGTATGATTGAGGCCTCTAGTTCGCACGTGTCGACTCAGTTCGCCGGAACTTGGGGATACATGCCGCCGGAATACAGGGCGGGAGTGATGGTGGCAACGGTGAAGGCTGACGTGTACAGTTTTGGGATTTTAATGTTCGAGGTTGCTATGGGCCGGAGGCCCAATTTGCCGATGGTTTTGGAGGGTAAAGAAGTGGGCTTAATAGAATGGGCCAGGATTTTGGTGGCCCAAAATAGGCATATGGAAATGGTGGATGCTAGCATTTCGAGGGAGGAACTCTTGGAGGCCAATGTGAAGGAGTATTTTAGGATTGCTTGTTTGTGCACGAGTGAGAATTCTAAGGAAAGGCCTCCTATGTCGGATGTTGTCGAGTTCTTGGATCGGATTTGTGACGTGAAGTTGCGTAACAATGACGAGCATCAAAATAAGCTCGACGAGTAA 1167 52.96 MPSSQRTPLLILASVASFTVASLFLFCVFFLCQKLKSKHRTARQQQVRNRDLDLSSISVDESASFDPSLRFSMAELRAATKNFSNDLIVGDGSFGVVYKARLSSGATVAIKKLNPDAFQGFREFRAEMETLGKLRHRNIVKILGYCVSGSDRLLIYEFVERGSLDNCLYETSTSAEADQDSGFLPSRQPLPWETRLKIMRGVANGLSYLHGLPQPIIHRDIKAGNVLLDPEFEAHIADFGLARMIEASSSHVSTQFAGTWGYMPPEYRAGVMVATVKADVYSFGILMFEVAMGRRPNLPMVLEGKEVGLIEWARILVAQNRHMEMVDASISREELLEANVKEYFRIACLCTSENSKERPPMSDVVEFLDRICDVKLRNNDEHQNKLDE 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36832151 36833317 + Maker00008597 Lcy10g1364 644875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1364 388 FunFam Phytosulfokine receptor 2 43 158 - -
Lcy10g1364 388 FunFam Phytosulfokine receptor 2 159 372 - -
Lcy10g1364 388 Pfam Protein tyrosine and serine/threonine kinase 89 368 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1364 388 Gene3D Transferase(Phosphotransferase) domain 1 160 387 - -
Lcy10g1364 388 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 10 371 IPR051564 GO:0016020(PANTHER)
Lcy10g1364 388 SMART serkin_6 83 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1364 388 Gene3D Phosphorylase Kinase; domain 1 40 158 - -
Lcy10g1364 388 CDD STKc_IRAK 89 371 - -
Lcy10g1364 388 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524(InterPro)
Lcy10g1364 388 SUPERFAMILY Protein kinase-like (PK-like) 64 368 IPR011009 -
Lcy10g1364 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1364 388 ProSiteProfiles Protein kinase domain profile. 83 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1364 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1364 Lcy-Chr10:36832151 Lcy6g0610 Lcy-Chr6:5821023 6.08E-71 dispersed
Lcy10g1364 Lcy-Chr10:36832151 Lcy3g1969 Lcy-Chr3:46840618 1.78E-69 transposed
Lcy10g1364 Lcy-Chr10:36832151 Lcy4g0776 Lcy-Chr4:9268109 3.48E-73 transposed
Lcy10g1364 Lcy-Chr10:36832151 Lcy8g1625 Lcy-Chr8:42832368 5.89E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1346 . . . . Bpe02g00205 . . Bma01g02515 . Cmo15g00590 . . . . . . Cpe13g00693 Bhi04g01757 . . . . . Lcy10g1364 . . . . . . . . . . . . . . Cme03g00296 . . . . . . . . . . . . . Car04g02364 Car15g00542 Cpe01g02126 . . . . . . . . . . . . . . . Lsi08g00568 . Chy03g00493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010752 0 1 0 1 1 0 2 0 0 1 1 1 2 1 0 1 0 0 2 0 1 1 1 0 1 1 1 1 0 1 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65393 None None None None Lcy PK