Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1370 ATGAAGTGTAGCTACTCGTTATCGGCGAAAGCAGACAAGCACATTGATTCTCGTCGCTCTGTGTCTGCTAGCAGGAATTTCACTAGAGCAATTCATATTTGCCTGCTTTTCACTCTCATTCTTGTACTGATTTCTCCATTTTTTTTGTTGTCGATATCGAAACGAGATAGCATCGATCGATACGGAGATGTTTTGGTGCACAAGATTAATGACGCTAAAAATAAGGCCATCAAGGTTTCTGCAATACTTGATGTCCGAGAGAATAAGGAGTTTGATTTTATACGTACCTTGTATGAAGGTGCTATAGCTGGAGGTGCTGCTGGTCTCGTCGTAGAAGCTGCTCTATATCCAATTGATACAATAAAAACTCGTCTACAGGCTGTTCGTGGAGGTGGAAAAATTGTATTGAAGGGTCTTTATTCTGGATTGGCTGCAAATCTTGTTGGGATGTTACCTGCCACTGCCGTTTTTGTTGGTGCATATGAACCTACGAAGCAGAAATTGCTCAAGTCTCTCCCTGAACACCTCAATGCTTTAGCTCATCTGACTGCAGGTGTCATAGGAGGTGTAGCTTCTTCACTCATCCGTGTACCAACAGAGGTAGTTAAGCAAAGGATGCAGACTAGCCACTTTGCGTCTGCATCGAATGCTGTCCACGTTATTGTTTCAAGGGAAGGTTTTAGAGGTCTTTATGCGGGGTATGGATCTTTCTTATTGCGAGATTTGCCATTTGATGCCATACAGTTCTGCATTTACGAACAACTTAGGATCGGGTACAAGCTAGCGGCGCAAAGAGATCCAGATGATCCTGAGAATGCTATAATTGGTGCTTTCGCTGGTGCTATTAGTGGGGCTGTAACCACTCCTCTTGACGTGATAAAAACCAGATTAATGGTTCAGGGATCAAATAGCCAATATCAAGGTATTCATGATTGTTGTAGGACTATAATGAAGGAAGAAGGAGCACGTGCATTTTTAAAGGGCATTGGGCCAAGGGTACTGTGGATAGGGTTAGGTGGCGCTATATTTTTTGGCGTTCTTGAAAAGACAAAGCAAATGCTTGCTAATAAGAGGCGACCGCTGCCTAGGAAACCCTTCGAGCCGCAATGA 1110 43.42 MKCSYSLSAKADKHIDSRRSVSASRNFTRAIHICLLFTLILVLISPFFLLSISKRDSIDRYGDVLVHKINDAKNKAIKVSAILDVRENKEFDFIRTLYEGAIAGGAAGLVVEAALYPIDTIKTRLQAVRGGGKIVLKGLYSGLAANLVGMLPATAVFVGAYEPTKQKLLKSLPEHLNALAHLTAGVIGGVASSLIRVPTEVVKQRMQTSHFASASNAVHVIVSREGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAQRDPDDPENAIIGAFAGAISGAVTTPLDVIKTRLMVQGSNSQYQGIHDCCRTIMKEEGARAFLKGIGPRVLWIGLGGAIFFGVLEKTKQMLANKRRPLPRKPFEPQ 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36914320 36920267 + Maker00008432 Lcy10g1370 644881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1370 369 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 85 360 - GO:0000095(PANTHER)|GO:0005743(PANTHER)|GO:0009941(PANTHER)
Lcy10g1370 369 Gene3D Mitochondrial carrier domain 100 361 IPR023395 -
Lcy10g1370 369 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 99 364 - -
Lcy10g1370 369 SUPERFAMILY Mitochondrial carrier 98 348 IPR023395 -
Lcy10g1370 369 PRINTS Mitochondrial carrier protein signature 100 113 IPR002067 GO:0055085(InterPro)
Lcy10g1370 369 PRINTS Mitochondrial carrier protein signature 231 249 IPR002067 GO:0055085(InterPro)
Lcy10g1370 369 PRINTS Mitochondrial carrier protein signature 113 127 IPR002067 GO:0055085(InterPro)
Lcy10g1370 369 PRINTS Mitochondrial carrier protein signature 276 298 IPR002067 GO:0055085(InterPro)
Lcy10g1370 369 ProSiteProfiles Solute carrier (Solcar) repeat profile. 95 167 IPR018108 -
Lcy10g1370 369 ProSiteProfiles Solute carrier (Solcar) repeat profile. 271 353 IPR018108 -
Lcy10g1370 369 Pfam Mitochondrial carrier protein 175 256 IPR018108 -
Lcy10g1370 369 Pfam Mitochondrial carrier protein 97 170 IPR018108 -
Lcy10g1370 369 Pfam Mitochondrial carrier protein 271 357 IPR018108 -
Lcy10g1370 369 ProSiteProfiles Solute carrier (Solcar) repeat profile. 176 258 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1370 K15111 - - csv:101220750 522.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1370 Lcy-Chr10:36914320 Lcy8g0314 Lcy-Chr8:9677956 1.37E-83 dispersed
Lcy10g1370 Lcy-Chr10:36914320 Lcy12g1480 Lcy-Chr12:33713908 5.45E-07 transposed
Lcy10g1370 Lcy-Chr10:36914320 Lcy2g1462 Lcy-Chr2:18233563 2.32E-08 transposed
Lcy10g1370 Lcy-Chr10:36914320 Lcy7g1187 Lcy-Chr7:13962237 2.43E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g594 . . . . . . . . . . . . . . Sed05g0790 . . Bhi04g01747 Tan11g1101 Cmetu03g1735 . Hepe02g2813 . Lcy10g1370 . . . . . . . . . Cone11ag1032 . Lsi08g00675 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00806 Cam08g1239 Cec08g0824 Cco08g0935 Clacu08g0942 . Cre08g0743 . . . .
Vvi18g1331 . . . . . . . . Cmo04g02578 Cmo15g00582 . . . . Sed05g0790 . Cpe13g00699 Bhi04g01747 Tan11g1101 Cmetu03g1735 . Hepe02g2813 . Lcy10g1370 Cla08g00747 Cam08g1174 Cec08g0764 Cco08g0871 Clacu08g0880 . Cre08g0682 . . . Cone20ag0664 . . . Cme03g01052 . . . . . . . . . . . . . Car04g02371 Car15g00536 Cpe01g02132 . . . . . . . . . . . . . . . Lsi08g00573 . Chy03g00489 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002717 3 2 1 1 1 1 3 1 1 2 1 1 3 2 2 2 2 2 3 1 2 2 2 2 2 2 2 3 2 2 56