Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1371 ATGGTGAACAGAAGTATCGGAAGACCCAATAGGCTCCAAATTTGCGATCGCCTGAACCTCACAGGAGGAAAAATGGAGTTTCTATTTTCGTTCTTACTTCTCTCTGTTACTTCTCCAGCTTTGTTTCGCGTTGCACTCGCTCGAGGCGGCTTCAACCGCTCCATTTCGCCAGTAGATTTCAATAGTAGTGCATATGGAAGTTCTGCTAGAATTTTACTCGAGGACAATCAATCTCAAAGAAGTGACAGCATCATGCAAGGTTATATGACCAATAAAGAGCTTGAGCAGGCCGTTAAAGCTTTTGGTCGAAAATGTAGTAAAATTTCTAGGATATACAGTATTGGAGACAGCGTGCAAGGGTTTCCACTGTGGGTAATGGAAATCTCTGACAAGCCTGGCCAGGAAGAAGCCGAACCTGCATTTAAGTACATAGGAAATGTACATGGAGATGAACCTGTTGGCAGGGAGCTTCTTTTGCAATTTGCAAACTGGATATGTGATAATTACCTGAAGGATCCATTGGCTACACTGATTGTGGAGAATGTTCATCTTCATATACTTCCATCTATGAATCCTGATGGCTTTTCTCTTAGGACACGTAATAATGCAAACAATGTTGATCTAAACAGAGATTTCCCCGACCAGTTCTTTTTCATCAATGATGATGAATATGCACGACAACCTGAAACAAAAGCAATTATGAAGTGGATGAGAGATGTACATTTCACTGCCTCTGCCACTTTGCATGGGGGTGCACTTGTTGCAAATTACCCATGGGATGGCACTGCAGATAAAAGGAGAGTTTACTATGCATGCCCTGATGATGAAACATTCCGATTCATGGCAAGTGTCTATAGTCGTTCACATCATAACATGTCTTTTAGCCAGGAATTTCAAGGAGGAATTACAAATGGAGCTTCATGGTACCCCATATATGGTGGCATGCAAGACTGGAACTATATACACGGTGGCTGTTTTGAGTTGACTTTAGAGATTACGGACAACAAATGGCCTCCTGCTAATGAGCTTGCTACCATTTTTGAGTACAACAAGTTGAGCATGCTAAATCTTGTTGCAAGCCTTGTTCAGACAGGAATACATGGAAGAATTTTTTCATCAGAGAGTGGAAGGCCGTTACCTGCAACAATTACACTCAAGGGAATAGATTACTCGGTTAAAGCTAGTCAAACGTTTGCCGACTATCACCGATTAGCTGCACCAAGACAGAAATACGAAGTAACGGCATCGATGCCCGGGTACAAGTCGAAGAACACGAGCATCTGGTTGGATGAGGGAGCTATGTCTGTGGACTTTATTCTTGATCCAGAGACAACAACCAAAGGAAAACTAATGCAAAACAGTGATTGCTACTGTGGCAATAGGCTCGACTTTGTGGGCTATATTTGGGGACACTACTTCGAAGCTTATATTTTCTTGGCGGTTGTCCTAGTATTTATTTGCTTTTTATTTCAGAGGAAGATGAAATCTAGACTTTCCAAGCAAAGATTAGTTGCATTGCCAAAAAGGATTGTGGTCTGA 1539 41.91 MVNRSIGRPNRLQICDRLNLTGGKMEFLFSFLLLSVTSPALFRVALARGGFNRSISPVDFNSSAYGSSARILLEDNQSQRSDSIMQGYMTNKELEQAVKAFGRKCSKISRIYSIGDSVQGFPLWVMEISDKPGQEEAEPAFKYIGNVHGDEPVGRELLLQFANWICDNYLKDPLATLIVENVHLHILPSMNPDGFSLRTRNNANNVDLNRDFPDQFFFINDDEYARQPETKAIMKWMRDVHFTASATLHGGALVANYPWDGTADKRRVYYACPDDETFRFMASVYSRSHHNMSFSQEFQGGITNGASWYPIYGGMQDWNYIHGGCFELTLEITDNKWPPANELATIFEYNKLSMLNLVASLVQTGIHGRIFSSESGRPLPATITLKGIDYSVKASQTFADYHRLAAPRQKYEVTASMPGYKSKNTSIWLDEGAMSVDFILDPETTTKGKLMQNSDCYCGNRLDFVGYIWGHYFEAYIFLAVVLVFICFLFQRKMKSRLSKQRLVALPKRIVV 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36920944 36931708 - Maker00008667 Lcy10g1371 644882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1371 512 FunFam Carboxypeptidase D 82 363 - -
Lcy10g1371 512 SUPERFAMILY Zn-dependent exopeptidases 83 359 - -
Lcy10g1371 512 CDD M14_CP_plant 88 360 - -
Lcy10g1371 512 SUPERFAMILY Carboxypeptidase regulatory domain-like 365 448 IPR008969 -
Lcy10g1371 512 Gene3D - 364 443 - -
Lcy10g1371 512 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 1 signature. 139 161 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Lcy10g1371 512 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 205 213 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Lcy10g1371 512 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 114 126 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Lcy10g1371 512 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 139 153 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Lcy10g1371 512 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 246 259 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Lcy10g1371 512 CDD Peptidase_M14NE-CP-C_like 365 440 - -
Lcy10g1371 512 Pfam Zinc carboxypeptidase 95 350 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Lcy10g1371 512 FunFam Carboxypeptidase D 365 450 - -
Lcy10g1371 512 SMART zn_carb 88 452 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Lcy10g1371 512 Gene3D Zn peptidases 86 361 - -
Lcy10g1371 512 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 2 signature. 249 259 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Lcy10g1371 512 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 77 433 IPR050753 GO:0004181(PANTHER)|GO:0005615(PANTHER)|GO:0006518(PANTHER)|GO:0016485(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1371 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1320 . . . . . . . . Cmo04g02579 . . . . . Sed11g1378 . . Bhi04g01745 Tan11g1099 . . Hepe02g2814 . Lcy10g1371 Cla08g00746 Cam08g1173 Cec08g0763 Cco08g0870 Clacu08g0879 . Cre08g0681 . . . Cone20ag0364 . . . Cme03g01053 Blo17g00133 . . Bda13g01417 . . . Bma02g00153 . . . . . Car04g02372 . Cpe01g02133 . . . . . . . . . . . . . . . Lsi08g00575 . Chy03g00488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010573 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32