Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1388 ATGGAACATCTCTTGGGTCTTCTCCGAATTCGGGTGCAGCGCGGTGTTAACCTCGCTGTTCGTGATACTCGTAGCAGCGATCCTTTTGTCGTCGTCACAATGGGCCAGCAGATTGCTCGGCTGTCACGTTCATCTGCTTTACCTAGAAATATGTATAGTTTGAAGACCCGTGTGGTGAAAAATAATTGCAATCCTGAATGGAATGATGAGTTGACCCTTTCAATTTCAGATGTGAAGACTCCAATCATTTTATCAGTGTATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCGAGATTGACATCGAACCGTACATAGAGTGTTTGACGATGGGACTGGAAAAACTCCCAGATGGTTGTGTGGTTAAGAGAGTATATCCAAGCAGAACAAACTGTTTATCTGATGAGAGCCAATGTCTTTGGAACAAGGGGAAAATTGTACAGAACATGCACCTTAGGTTGAAGAATGTAGAGTGTGGTGAGGTGGCTATTCAGCTCGAATGGATCGATGTTCCTGGTTCTAAGGGTCTGCCGAGGGAGGGTACGAGCATCTTCTGA 567 44.97 MEHLLGLLRIRVQRGVNLAVRDTRSSDPFVVVTMGQQIARLSRSSALPRNMYSLKTRVVKNNCNPEWNDELTLSISDVKTPIILSVYDKDTLTDHDKMGDAEIDIEPYIECLTMGLEKLPDGCVVKRVYPSRTNCLSDESQCLWNKGKIVQNMHLRLKNVECGEVAIQLEWIDVPGSKGLPREGTSIF 188
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 37243195 37246521 + Maker00008358 Lcy10g1388 644899
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1388 188 SMART C2_3c 7 117 IPR000008 -
Lcy10g1388 188 Pfam C2 domain 6 107 IPR000008 -
Lcy10g1388 188 ProSiteProfiles C2 domain profile. 1 121 IPR000008 -
Lcy10g1388 188 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 178 IPR044562 -
Lcy10g1388 188 Gene3D C2 domain 4 183 IPR035892 -
Lcy10g1388 188 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 173 IPR035892 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1388 Lcy-Chr10:37243195 Lcy2g0383 Lcy-Chr2:3172026 8.48E-68 dispersed
Lcy10g1388 Lcy-Chr10:37243195 Lcy12g0211 Lcy-Chr12:2651305 1.05E-67 wgd
Lcy10g1388 Lcy-Chr10:37243195 Lcy7g1196 Lcy-Chr7:14166702 3.96E-74 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1388 - - - 0.0