Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g1388 | ATGGAACATCTCTTGGGTCTTCTCCGAATTCGGGTGCAGCGCGGTGTTAACCTCGCTGTTCGTGATACTCGTAGCAGCGATCCTTTTGTCGTCGTCACAATGGGCCAGCAGATTGCTCGGCTGTCACGTTCATCTGCTTTACCTAGAAATATGTATAGTTTGAAGACCCGTGTGGTGAAAAATAATTGCAATCCTGAATGGAATGATGAGTTGACCCTTTCAATTTCAGATGTGAAGACTCCAATCATTTTATCAGTGTATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCGAGATTGACATCGAACCGTACATAGAGTGTTTGACGATGGGACTGGAAAAACTCCCAGATGGTTGTGTGGTTAAGAGAGTATATCCAAGCAGAACAAACTGTTTATCTGATGAGAGCCAATGTCTTTGGAACAAGGGGAAAATTGTACAGAACATGCACCTTAGGTTGAAGAATGTAGAGTGTGGTGAGGTGGCTATTCAGCTCGAATGGATCGATGTTCCTGGTTCTAAGGGTCTGCCGAGGGAGGGTACGAGCATCTTCTGA | 567 | 44.97 | MEHLLGLLRIRVQRGVNLAVRDTRSSDPFVVVTMGQQIARLSRSSALPRNMYSLKTRVVKNNCNPEWNDELTLSISDVKTPIILSVYDKDTLTDHDKMGDAEIDIEPYIECLTMGLEKLPDGCVVKRVYPSRTNCLSDESQCLWNKGKIVQNMHLRLKNVECGEVAIQLEWIDVPGSKGLPREGTSIF | 188 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 37243195 | 37246521 | + | Maker00008358 | Lcy10g1388 | 644899 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g1388 | 188 | SMART | C2_3c | 7 | 117 | IPR000008 | - | |
| Lcy10g1388 | 188 | Pfam | C2 domain | 6 | 107 | IPR000008 | - | |
| Lcy10g1388 | 188 | ProSiteProfiles | C2 domain profile. | 1 | 121 | IPR000008 | - | |
| Lcy10g1388 | 188 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 178 | IPR044562 | - | |
| Lcy10g1388 | 188 | Gene3D | C2 domain | 4 | 183 | IPR035892 | - | |
| Lcy10g1388 | 188 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 3 | 173 | IPR035892 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1388 | Lcy-Chr10:37243195 | Lcy2g0383 | Lcy-Chr2:3172026 | 8.48E-68 | dispersed | |
| Lcy10g1388 | Lcy-Chr10:37243195 | Lcy12g0211 | Lcy-Chr12:2651305 | 1.05E-67 | wgd | |
| Lcy10g1388 | Lcy-Chr10:37243195 | Lcy7g1196 | Lcy-Chr7:14166702 | 3.96E-74 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g1388 | - | - | - | 0.0 |