Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1389 ATGAAGAGGGAGCACCATCATCTTCATCCTCGTCCGGAGCCGCCTTCCACGGCTGCCGCCTCTAATGGGGACGGTTATTTGAACACTGGCAAGGCTAAGCTCTGGGAGGAGGAGGCCCAGCTCGACGGAGGAATGGATGAGCTTCTCGCTGTTTTGGGTTACAAGGTTAAGTCGTCGGACATGGCGGATGTTGCCATGAAGCTCGAACAGCTTGAAGAAGCTATGTGTCAAGTTCAAGATACTGGCCTTTCGCATCTCGCTTTCGACACTGTTCATTACAATCCTTCCGATCTCTCCACTTGGCTTGAAAGTATGCTCACCGAGCTCCATCCGCCGCCTAATTTTCCGCCGCCGCCTCCTTCGCAGTTGGACGATTCGTCGTTTCTAGCTCCGGCGGAATCCTCCACCATCACTTCCATTGATTACGACCCCCAACGGCAAAGCAGCAGCCGGATTTTCGAGGAATCTTCGAGTTCTGATTACGACCTTAAAGCTATCACCAGCAGCGCCATTTATTCGCCTAGGGAGAACAAGCGTTTGAAGTCCGAGCCGGACTCGGATTTGTTCTCGACCTCCGCGATTGGGGCTTCTGATTCTGCAACTCGCCCCGTAGTCCTCGTCGACTCGCAGGAGAACGGAATTCAACTGGTTCATGCTCTGATGGCCTGCGCCGAAGCCGTACAGCAGAACAATCTGAATCTGGCGGAGGCTCTGGTGAAGCGAATCGGTTTCTTGGCGGTTTCTCAAGCCGGAGCGATGAGGAAGGTCGCCACGTTCTTCGCCGAAGCTTTGGCACGCCGAATCTACAGGCTCTGCCCTGAGAATCCCCTCGATCATTCAATGTCCGATATGCTTCAGTTGCATTTCTACGAGAGCTGTCCGTATCTGAAATTCGCTCACTTCACTGCCAATCAAGCGATTCTCGAAGCTTTCGAAGGAAAGAAGCGCGTTCACGTCATCGATTTCTCGATGAACCAAGGGATGCAGTGGCCGGCTCTGATTCAAGCCCTAGCTCTCCGGCCGAGTGGTCCTCCAGCCTTCCGGCTCACCGGAATCGGACCTCCAGCGCCGGATAACTCCGATTACCTTCAAGAAGTCGGCTGGAAGCTTGCTAAATTAGCCGAAACCATCCACGTCGAGTTCGAATACAGAGGATTTGTCGCGAACAGCTTGGCGGATCTGGACGCGTCGATGCTGGAACTCCGGCCGAGCGAAGTGGAATCGGTGGTGGTGAACTCGGTGTTCGAGTTGCATAAGCTACTGGCTCGGCCGGGCGCCATTGAAAAGGTTCTGTCGGTGGTGAAGCAGATGAAGCCGGAGATCATGACGGTGGTGGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCGTGGACCGTTTCACTGAGTCACTCCACTACTACTCGACGCTTTTTGACTCGTTGGAGGGCTCGCCCAACAACGAGGACAAGGTCATGTCCGAAATGTACCTCGGGAAGCAAATCTGCAACGTGGTGGCTTGCGAAGGCGCCGACCGAGTCGAGCGCCACGAGACTCTGACTCAGTGGCGGAATCGGCTGTCCTCCGCCGGGTTCGAGCCCATCCACCTCGGGTCGAACGCGTTCAAGCAAGCGAGTATGCTCCTGGCCCTATTCGGCAGCGGAGAAGGATACCGGGTGGAAGAGAACAACGGATCGCTAATGCTGGGATGGCACACCCGCCCACTCATCGCCACCTCCGCCTGGAAACTCGGCAGCAACACGGTGGTAGCTCACTGA 1755 55.67 MKREHHHLHPRPEPPSTAAASNGDGYLNTGKAKLWEEEAQLDGGMDELLAVLGYKVKSSDMADVAMKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWLESMLTELHPPPNFPPPPPSQLDDSSFLAPAESSTITSIDYDPQRQSSSRIFEESSSSDYDLKAITSSAIYSPRENKRLKSEPDSDLFSTSAIGASDSATRPVVLVDSQENGIQLVHALMACAEAVQQNNLNLAEALVKRIGFLAVSQAGAMRKVATFFAEALARRIYRLCPENPLDHSMSDMLQLHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALIQALALRPSGPPAFRLTGIGPPAPDNSDYLQEVGWKLAKLAETIHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGAIEKVLSVVKQMKPEIMTVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGSPNNEDKVMSEMYLGKQICNVVACEGADRVERHETLTQWRNRLSSAGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLMLGWHTRPLIATSAWKLGSNTVVAH 584
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 37256932 37258686 - Maker00008615 Lcy10g1389 644900
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1389 584 SMART DELLA_2 46 119 - -
Lcy10g1389 584 MobiDBLite consensus disorder prediction 110 124 - -
Lcy10g1389 584 FunFam DELLA protein GAI 44 109 - -
Lcy10g1389 584 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Lcy10g1389 584 MobiDBLite consensus disorder prediction 109 128 - -
Lcy10g1389 584 Pfam GRAS domain family 216 575 IPR005202 -
Lcy10g1389 584 MobiDBLite consensus disorder prediction 1 25 - -
Lcy10g1389 584 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 179 574 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Lcy10g1389 584 Gene3D - 44 109 IPR038088 -
Lcy10g1389 584 ProSiteProfiles GRAS family profile. 207 575 IPR005202 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1141 Lcy-Chr10:33820476 Lcy10g1389 Lcy-Chr10:37256932 1.49E-223 dispersed
Lcy10g1389 Lcy-Chr10:37256932 Lcy2g0779 Lcy-Chr2:6922706 1.57E-147 dispersed
Lcy10g1389 Lcy-Chr10:37256932 Lcy12g0184 Lcy-Chr12:2247346 8.47E-211 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18992 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1389 K14494 - csv:101204164 1055.82