Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1398 ATGAAAATGTTTCATTATTTTCTTCTCTTTTCATCACTACTCATCCATGGGAGAAGCTTCAATAATCCCATGTCTTGCTCCCAAACCCCATATCCAGACCTCTGCTTCCATTTCATCAACCAAAACGACGACGTATCGACCGCCGTTATCGATAAAACTTCTCATATTACTCGCTTTCGAAACTCGGCCATTCGAGCCACTTTGAACCAAGCTATGGTGGCCTACCGCCACCTTCTCTCCGCCGTGAATATAGATTCCTTTGACGACGATAAAGATGACAATAGAGCTAAATTAGCTTTGATCGACTGTTTGGAACTCTACGCGGATTCGATCGTCGAACTCAACCGTTCGACGATCAACTCCATGAGTGCCAAACCAATCGATCACTCGACATCGCTAAGTGCTTCACTAGCGAACCATCAAACATGTCGAGATGGATTTCGAGATTTCGGGTTTTCTTCCGATCATTTGAATTCCATTTTCCCGTTTCGAATTTTGAGTAACTTCTCAAAATTGGTTAGCAATTCTCTCGCCATCGCCAAGGCCGCTGCCGCTACTTCCTCTGCCACCGGAGGCCGGAGGCTGCTAGCGGACTCGTTTCCCAGTTGGGTTTCCGGTGATGATAGGATGCTCCTCCAGGACACGGGTGGAAAGGCGGCGGATATGGTGGTGGCCCAAGATGGGAGCGGCGATTTTAGGACGATATCGGAGGCGGTGGCGGCGGCAGCGGAGGCGAGGAAGGGAGGCGGAAGGTTTGTTATATATGTGAAAGGTGGGGTTTACAGAGAGAATGTTGAGATTAAGAAGACGATGAAGAATATTATGATGATCGGAGATGGGATTGATTCGACGATCGTTACAGCTATGAGGAACGTCCAAGATGGATCGACCACTTTCCGATCAGCCACTTTTGCTGTGGCCGGTGAGGGGTTCATCGCCAAAGACATGACGTTTGAGAACACGGCAGGGCCGGAGAAACACCAAGCCGTCGCACTCCGATCAAACGCCGATCGCTCAGTTTTCTACCGATGCAGCTTCAAAGGCTACCAAGACACTCTATACGCCCACTCCAACCGCCAGTTCTACCGTGAATGCCACATTTACGGAACCATCGACTTCATATTCGGCGACGGCGCCGCCGTATTTCAAAACTGCAACATCTTCGTCAGAAAGCCGATGAATAACCAGAAAAACACTGTCACGGCGCAGGCGAGATCCGACCCGAATGAGAACACTGGGTTCGTGATCCATAATTCCGTCGTCGGAGCGGCGCCGGACCTGAAGCCGGTGGAGGCTCTGTACGAAACTTATTTGGGGAGGCCGTGGAAGGCCTATTCGAGGACGGTGGTAATGAGGAGTTTTTTGGATGGGCTGGTTGAACCGGCCGGGTGGCTTCCTTGGGCCGGAGATTTCGGTCTGAGCACGCTTTATTATGGTGAGTTTATGAACACTGGCGGCGGGGCTAGTACGACGGGGAGGGTGCAGTGGCCGGGATATCATGTGATGACAAGTGCGGCGGAGGCCGGGAGGTTTGCGGTGGAGAATTTCTTGGAAGGAGGAGATTGGATTCCGGCCACTGGTGTGCCGTTTGCAAATGGGTTATGA 1605 51.28 MKMFHYFLLFSSLLIHGRSFNNPMSCSQTPYPDLCFHFINQNDDVSTAVIDKTSHITRFRNSAIRATLNQAMVAYRHLLSAVNIDSFDDDKDDNRAKLALIDCLELYADSIVELNRSTINSMSAKPIDHSTSLSASLANHQTCRDGFRDFGFSSDHLNSIFPFRILSNFSKLVSNSLAIAKAAAATSSATGGRRLLADSFPSWVSGDDRMLLQDTGGKAADMVVAQDGSGDFRTISEAVAAAAEARKGGGRFVIYVKGGVYRENVEIKKTMKNIMMIGDGIDSTIVTAMRNVQDGSTTFRSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSVFYRCSFKGYQDTLYAHSNRQFYRECHIYGTIDFIFGDGAAVFQNCNIFVRKPMNNQKNTVTAQARSDPNENTGFVIHNSVVGAAPDLKPVEALYETYLGRPWKAYSRTVVMRSFLDGLVEPAGWLPWAGDFGLSTLYYGEFMNTGGGASTTGRVQWPGYHVMTSAAEAGRFAVENFLEGGDWIPATGVPFANGL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37454797 37458623 - Maker00008605 Lcy10g1398 644909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1398 534 NCBIfam pectinesterase inhibitor domain 25 181 IPR006501 GO:0004857(InterPro)
Lcy10g1398 534 Pfam Plant invertase/pectin methylesterase inhibitor 25 179 IPR006501 GO:0004857(InterPro)
Lcy10g1398 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 181 IPR035513 -
Lcy10g1398 534 Pfam Pectinesterase 221 519 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy10g1398 534 SMART PMEI_2 15 179 IPR006501 GO:0004857(InterPro)
Lcy10g1398 534 ProSitePatterns Pectinesterase signature 1. 248 267 IPR018040 -
Lcy10g1398 534 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Lcy10g1398 534 Gene3D - 217 534 IPR012334 -
Lcy10g1398 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 182 IPR035513 -
Lcy10g1398 534 PANTHER PECTINESTERASE 22 525 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy10g1398 534 SUPERFAMILY Pectin lyase-like 219 532 IPR011050 -
Lcy10g1398 534 CDD PMEI-like_3 25 177 - -
Lcy10g1398 534 FunFam Pectinesterase 216 534 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1398 Lcy-Chr10:37454797 Lcy6g0260 Lcy-Chr6:2261062 3.78E-167 dispersed
Lcy10g1398 Lcy-Chr10:37454797 Lcy12g1385 Lcy-Chr12:31097205 4.85E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1398 - - - 0.0