Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1411 ATGGGTGATGTGAAGGACAAGGTTAAGGGTTTCATGAAACGGTTTAATAATTCGTTGTCCTCATCTTCGTCTTCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCGGCGTCGGCCAGTTCTTTGCCTACCCGCCCATCGCAAAATCCCATCTCAAAGCCGAAGCTGGTTAATCCACCTTCAGATTCCCCGGTAAATTCAAAGCCGCCGGTTGCGGATTCAATTGGCACAGGCCAAAACAGGTCAGAACTGTCGAATAAGTCGAACCCAGATCGTAAACCGGCTGATGGATTTGACCCATTTGACTCGTTTATTACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAAGAGGTTTCAGTGCACGTAGATAGCTGTGTCAATGATAATACAGCCAAAGGACCAGCGGATCTGCCTATGAACGATGCAGAATCTCGGAGTGAATTGGAGGCTTGCGTTGGCACTTTCTTATCAGGTAAGCCATCACAAGGTTCATTGGAAATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGCTGGGGGAGTGGAATTGTTGGAGTTTGTGGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGACAACCATGGAAGTTCCAACAAAGGAAGAAATTAACGTATTAAGTAAGGTAATAGATTCGATTGACCGGCCAAAGCTTGATGAACAGCAAAAGAAAGGCAGCACTGCATCTATGGCTTCAACCCAGGTTGATGAACTGATTGAACCAAAGAAGATAGACAGACAGATTCGGGTATTCTTTGCTGTCCCAGAAAACGTTGCAGCAAACATTGAGCTACCAGATTCCTTCTATAAGCTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCGGAATCTCAGCTTTTGGTTCCGAAATCATACAAGGAAAAACAGGCCAAAGCTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAATCCAGTTTCCCGATGGTGTAGTACTTCAAGGTGTTTTTTCTCCTCGCGAAACGACAAGTGCTCTGTATGAGTTTGTGAGCACAGCACTGAAAGAACCCGGTTTGGAATTCGAATTGATACATCCTGTCGGTGTTAAACGGCGTACAATCGCTCATTTTCCTGCAGAAGGAGAGAAAGCTAAAACACTAGATGATGAGGAGTTAGTCCCCTCAGGTCTTGTCAAGTTTAGACCCATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAATGAACTCCTTGAGATCATTGAACCACTCGTTAGCGGTTCAGCCGTGGCTCCTCCTGCTCAAGTTTAA 1440 44.03 MGDVKDKVKGFMKRFNNSLSSSSSSSFKGQGRVLGSSSSASASSLPTRPSQNPISKPKLVNPPSDSPVNSKPPVADSIGTGQNRSELSNKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSVHVDSCVNDNTAKGPADLPMNDAESRSELEACVGTFLSGKPSQGSLEIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAAGGVELLEFVGFKLQEEDGEMWTTMEVPTKEEINVLSKVIDSIDRPKLDEQQKKGSTASMASTQVDELIEPKKIDRQIRVFFAVPENVAANIELPDSFYKLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPRETTSALYEFVSTALKEPGLEFELIHPVGVKRRTIAHFPAEGEKAKTLDDEELVPSGLVKFRPIETDSVVFTGLRNELLEIIEPLVSGSAVAPPAQV 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37647767 37652106 - Maker00008497 Lcy10g1411 644922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1411 479 MobiDBLite consensus disorder prediction 15 88 - -
Lcy10g1411 479 CDD UBX_UBXN6 364 444 - -
Lcy10g1411 479 Pfam UBX domain 360 439 IPR001012 GO:0005515(InterPro)
Lcy10g1411 479 CDD PUB 170 266 - -
Lcy10g1411 479 SMART ubx_3 356 445 IPR001012 GO:0005515(InterPro)
Lcy10g1411 479 SMART PGNneu 183 250 - -
Lcy10g1411 479 Gene3D - 177 267 - -
Lcy10g1411 479 Gene3D - 353 445 - -
Lcy10g1411 479 SMART c2hc_5 122 146 IPR006642 GO:0003677(InterPro)|GO:0006281(InterPro)
Lcy10g1411 479 SUPERFAMILY Ubiquitin-like 330 442 IPR029071 -
Lcy10g1411 479 Pfam PUB domain 182 250 IPR018997 -
Lcy10g1411 479 ProSiteProfiles UBX domain profile. 359 443 IPR001012 GO:0005515(InterPro)
Lcy10g1411 479 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 470 - GO:0050832(PANTHER)
Lcy10g1411 479 FunFam UBX domain-containing protein 6 353 444 - -
Lcy10g1411 479 SUPERFAMILY PUG domain-like 181 245 IPR036339 -
Lcy10g1411 479 MobiDBLite consensus disorder prediction 15 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1411 Lcy-Chr10:37647767 Lcy4g1679 Lcy-Chr4:42447118 1.12E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18993 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1411 K14011 - csv:101209321 808.135