Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1442 ATGGTACCGCCAAAAATGTCCCTTCATCTCAGTCATCCACTCCCAATATTCCCCTGCCGGAGTGGATTCCTATCCAAATCTCGGCCACTGGCGGCGAAGTCGATTGTTTCCTATTCCGCCATCAACCGCTTCTCTGCCGGATGTGAGAGGAAGTATACGAGTGTGATGATAGTCCCGACGGGAGTTGGCGCAGCCATTGGTGGATACGCAGGTGACGCTCTGCCGGTTGCTCGTGCCCTCGCCTCCGTCGTCGATTGCCTTATCACTCACCCTAACGTGCTTAATGCAGCAATGCTTTACTGGCCGATGCAAAATGTGCTTTATGTTGAAGGCTATGCACTCGATCGGTTTGCAGAAGGTTCATGGGCCCTAAAACCTGTTCATCAGAATCGGATAGGATTGGTTCTCGATGCTGGAATCGAGGAAGAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGAGCTTCTCTTGGATTGCCTGTGATGGAATATGTTGTCACAGAGACACCTTTAATGGTAGAGAAGTGGATTGATCCAAAAACTGGACAATCAACTGGGAGGATTAGACACCCTGCTTCGCTACTGAGAGCCGTGCAGACATTAATGAACCGGTCGAAGGTGAATGCTGTTGCAGTTGTCGGTCGATTCCCAGATGATGATGTTGAAGAGATAGATGATTATCGACAAGGGATGGGAGTTGATGCTTTGGCAGGGGTGGAGGCTGTTATTAGCCATCTTGTGGTGAAGGAGTTCCAGATTCCATGTGCTCATGCTCCTGCTTTATCTCCTACTCCCTTGTGCAAATCTCTATCTCCAAAATCGGCAGCTGAGGAGATACCACCACAAGATTGCGACATGGCTTTCAGCATGACAATTTCTCTTTCTGATAAGTACTCCATTTGGTGTATAGCTCTTTGCAATAGCTGTCTCGTTCTCTTTATCTCTCTCTCATGCTTTCGAGGCCTCCATCCTCTGCTACAGTTAGGATACACGTTCTTACCATGTGTACTTTCTGGGCTAAGTAAAGCGCCTCAATACTTGACCAAGAGTTCTGAATCATTAGGGAGGGACTGCATATTGGCAAATGATGTTGATAGTGTCATTCTACCTTTAGATGCTTGTGGAGGGGAGGGCGCTCTTGCTTTTGCCAGAAGCAACCAGTGCAAGCCACTTATTATTGCGGTTGAGGAAAATGAAACAGTTCTCAGCGATTCTCCAGACTCACTTGGGATTGAGGCGGTAAAAGTCTCAAATTATTGGGAAGCCATCGGTGTTATTGCAGCTCACAAGGCAGGAATAGACCCCTATTCCCTGCGAAGAAATAGAATCAACAACATTAAGTGCATTACCACTACATCTCCTAATGGTTGCGCAGTTTCAAGATCTATTGAATTGACCAACGAAACTTGGTTATACTTTGTAGCTATCTTACAGAAATTAAAATTCATTGCTTGGAAATGGGAGCTCTATACACAACTCCTTTTCACAGAGCACTTAGCGTACGTGGCAATGAGCAGCGAGGTCGTCGGCGACGGCCGGCGGCGTGCCTTAGCGCTGCAACTTCTTGACCTTGTACGTGACTTTGTTCTGATGTCAGGGAGGTCCATCGCCGGCTCCGGAGACGTCATGAAAAAAGACTGCACCGATCTCATCCGTCGGATCGCGCTCCTGATTCATCTGGCGGAGGAGATCACTAACTTCCACGGCGGCGGCGGCGGCGACAATTTTGAGGAATTGAATGAGTCTGGTTCTTCTTCTTTGGATTGCCTTTCGGAAGTGGTGGGAGCAATTCAGGCGGCGAAGCGCCTTCTGTACGCCGCTTTGACTTTCTGTGGAATCGACGACGACGACGCTTCTGCCTCTGCGACTTCGACTGACGGAGCTTCCAAAAAATTGGTTCTACAATTCCAGTACGTGACCTCCAGATTGGAAACTGCACTCTCAAATCTTCCATACGACCACTTTTGCGTCTCAGATGAAGTTCAGGAACAGGTTGATTTGGTTAGAGCACAGTTGAGGAGAGCATCAAACAAGTATGACTCTATGTCTAAACCTACTGACAAGAAGCTCCAAGCTAGAACTTCTGTGAAATGGAAGGTCAACAATGATGTCAAGAGCATGTCTAGTGTTGATGATTCAGATACAGAGTCTCACCATCGTCCCGAGAACCGGGCCGATCGAATCGGTTTCGATTCGGAGGAGCTGAGGAACTCGAATTCGTGTTTGGATGAGTGTTCGAGTGTTGTTCATTCTGATATGGAAGATGTTCTAGCCAGCAAGAGCCAAGATGATGTTGGGAAGCCTGATGAAATTGAAATTCCTGAGAACTTCTTATGCCCCATTTCCTTTGAGTTGATGATAGATCCCGTCATCATCTCGACGGGGCAGACATATGAGAGGTTCAACATACAGAACTGGATAGACAGAGGAAATACAACATGTCCAAAAACTCAGGAGCAGCTCCAAGCGCTGAACCTCACTCCAAATTTTCTTATGAAAAAACTCATCTATGAATGGTGTCAAGAACACAATGTCAAGCTAGAGGAAGGATTAACCAACAGGAAACTTAAGAAGTACAGATCATTTGAAGACGGTTTCAGAAGGACTCTGCCAATCAAAACTCTGGTTCGAAACCTTTCTTTTGGATCGGTTCAGGAGCAGAAGGCGGCCGTGACCGAGATCCGAAATCTATCGAAAAGCAGCTCAGATCACAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTGGTTAACCTTTTAACTTCAGAAGATGTTCTAATACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCATGACCAAAACAAGAGACTTGTTATGCTTTCTGGTGCAGTTTCTTACATTTCCGAAGTCCTCAAATTTGGGAGCATGGAAGGGAGAGAGTGTGCTGCTGCCACGATTTACAGCTTGTCGTTAGCTGATGAGAACAAGGCGATAATCGGGGCTTCGGGCGTGATCCCGAACCTGTTGGAAATCCTCGAGATCGGGAGCCCAAGAGGGCAGAAAGATGCTGCAGGAGCTGTGTTGAATTTGTGTATGTACCAAGGGAACAAGGGCAGGGCTCTCAGGGCTGGGATTGTCAAACCATTGTTGAAAATGCTCTCTGATTCAAATGGCTCCTTGGTTGATGAAGCTCTGTATATAATGTCGGTTCTTTGCGGCCATCCAGAGGCGAAGGCTGCGATGGCGAATGCGAATACGCTGCTCGCTTTGATCGACGTTGTGAAGACGGGATCATCTCGCAGCAAGGAAAATGCAGCTGCAGTTCTGCTTGCATTGTGCAAGGGAGATTTGGAGAAGCTGACATGGTTAACCAGGATTGGCGCCGCGATGCCGTTGATGAAACTCGCCGAGAACGGCACCGGTAGAGCGAGGCGGAAGGCTGCTTCATTGTTGGAGCAACTAAGGAAATCATGA 3453 47.49 MVPPKMSLHLSHPLPIFPCRSGFLSKSRPLAAKSIVSYSAINRFSAGCERKYTSVMIVPTGVGAAIGGYAGDALPVARALASVVDCLITHPNVLNAAMLYWPMQNVLYVEGYALDRFAEGSWALKPVHQNRIGLVLDAGIEEELRIRHLQVADAARASLGLPVMEYVVTETPLMVEKWIDPKTGQSTGRIRHPASLLRAVQTLMNRSKVNAVAVVGRFPDDDVEEIDDYRQGMGVDALAGVEAVISHLVVKEFQIPCAHAPALSPTPLCKSLSPKSAAEEIPPQDCDMAFSMTISLSDKYSIWCIALCNSCLVLFISLSCFRGLHPLLQLGYTFLPCVLSGLSKAPQYLTKSSESLGRDCILANDVDSVILPLDACGGEGALAFARSNQCKPLIIAVEENETVLSDSPDSLGIEAVKVSNYWEAIGVIAAHKAGIDPYSLRRNRINNIKCITTTSPNGCAVSRSIELTNETWLYFVAILQKLKFIAWKWELYTQLLFTEHLAYVAMSSEVVGDGRRRALALQLLDLVRDFVLMSGRSIAGSGDVMKKDCTDLIRRIALLIHLAEEITNFHGGGGGDNFEELNESGSSSLDCLSEVVGAIQAAKRLLYAALTFCGIDDDDASASATSTDGASKKLVLQFQYVTSRLETALSNLPYDHFCVSDEVQEQVDLVRAQLRRASNKYDSMSKPTDKKLQARTSVKWKVNNDVKSMSSVDDSDTESHHRPENRADRIGFDSEELRNSNSCLDECSSVVHSDMEDVLASKSQDDVGKPDEIEIPENFLCPISFELMIDPVIISTGQTYERFNIQNWIDRGNTTCPKTQEQLQALNLTPNFLMKKLIYEWCQEHNVKLEEGLTNRKLKKYRSFEDGFRRTLPIKTLVRNLSFGSVQEQKAAVTEIRNLSKSSSDHRVEIAEAGAIPQLVNLLTSEDVLIQENAISCILNLSLHDQNKRLVMLSGAVSYISEVLKFGSMEGRECAAATIYSLSLADENKAIIGASGVIPNLLEILEIGSPRGQKDAAGAVLNLCMYQGNKGRALRAGIVKPLLKMLSDSNGSLVDEALYIMSVLCGHPEAKAAMANANTLLALIDVVKTGSSRSKENAAAVLLALCKGDLEKLTWLTRIGAAMPLMKLAENGTGRARRKAASLLEQLRKS 1150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38092569 38104226 + Maker00006875 Lcy10g1442 644953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1442 1150 Pfam Armadillo/beta-catenin-like repeat 903 942 IPR000225 GO:0005515(InterPro)
Lcy10g1442 1150 Pfam U-box domain 775 846 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy10g1442 1150 FunFam RING-type E3 ubiquitin transferase 861 1150 - -
Lcy10g1442 1150 ProSiteProfiles U-box domain profile. 774 848 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy10g1442 1150 MobiDBLite consensus disorder prediction 711 732 - -
Lcy10g1442 1150 SMART Ubox_2 778 841 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy10g1442 1150 Coils Coil 660 680 - -
Lcy10g1442 1150 SUPERFAMILY RING/U-box 770 848 - -
Lcy10g1442 1150 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 914 956 IPR000225 GO:0005515(InterPro)
Lcy10g1442 1150 SUPERFAMILY ARM repeat 874 1147 IPR016024 -
Lcy10g1442 1150 Gene3D - 872 1028 IPR011989 -
Lcy10g1442 1150 Pfam Protein of unknown function (DUF3326) 53 281 IPR021763 -
Lcy10g1442 1150 Pfam Protein of unknown function (DUF3326) 329 441 IPR021763 -
Lcy10g1442 1150 MobiDBLite consensus disorder prediction 707 732 - -
Lcy10g1442 1150 Gene3D - 1029 1150 IPR011989 -
Lcy10g1442 1150 CDD RING-Ubox_PUB 776 828 IPR045210 -
Lcy10g1442 1150 PANTHER OS01G0127400 PROTEIN 27 281 IPR021763 -
Lcy10g1442 1150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 757 857 IPR013083 -
Lcy10g1442 1150 SMART arm_5 985 1025 IPR000225 GO:0005515(InterPro)
Lcy10g1442 1150 SMART arm_5 944 984 IPR000225 GO:0005515(InterPro)
Lcy10g1442 1150 SMART arm_5 1026 1066 IPR000225 GO:0005515(InterPro)
Lcy10g1442 1150 SMART arm_5 903 943 IPR000225 GO:0005515(InterPro)
Lcy10g1442 1150 SMART arm_5 1067 1107 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1442 Lcy-Chr10:38092569 Lcy7g0632 Lcy-Chr7:5781207 9.64E-65 dispersed
Lcy9g2271 Lcy-Chr9:47150163 Lcy10g1442 Lcy-Chr10:38092569 4.19E-14 transposed
Lcy10g1442 Lcy-Chr10:38092569 Lcy7g1126 Lcy-Chr7:12510849 7.04E-18 wgd
Lcy10g1442 Lcy-Chr10:38092569 Lcy7g1209 Lcy-Chr7:14709934 1.06E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1442 - - - 0.0