Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1451 ATGGCGGTTGTACCCATCAACTCATCCAACTTGGATCTCTCCATTTCCGTGCCCGGCTTTGCTTCTTCCTCGTCGCGTCCTTCCTTCGCGAGAGAATTGGACATGAACCGGGTACCGGCGGTGGGAACGGAGGAGGAAGAGTGGGCGGTGGCACCGAGCACGGAGGAGGAAGAAGAGAGCTGCATAAATGTATGTCAGCCGAGGAAGAAGCTTCGTCTGTCGAAAGATCAGTCTCGTCTTCTTGAAGAGAGCTTCAGACTCAACCATACATTAAACCCTAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGATGGAATGTGCCTATTTGAAGAGATGGTTTGGATCATTGACAGAGCAAAACCGCCGGCTGCGGAGGGAACTGGAGGAGCTGAGGGCCATCAAGGTTGCTCCGCCCGCCCTCGTCTCACCCCATGACCGACGGCCATCCCTCCCAGCGTCTACTATAACCATGTGTCCTCGGTGCGAGCGCGTGACTGCAGCCACCGGGACCGCCATCACCGCCACCACAATGCCATCAAAGGCGGTTCTGTCCGCCCTCAAGTTGCGGCAGCCGTCGGGAGCTTGCTGA 660 55.76 MAVVPINSSNLDLSISVPGFASSSSRPSFARELDMNRVPAVGTEEEEWAVAPSTEEEEESCINVCQPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECAYLKRWFGSLTEQNRRLRRELEELRAIKVAPPALVSPHDRRPSLPASTITMCPRCERVTAATGTAITATTMPSKAVLSALKLRQPSGAC 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38288078 38291123 - Maker00006911 Lcy10g1451 644962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1451 219 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy10g1451 219 FunFam Homeobox-leucine zipper protein 18 53 129 - -
Lcy10g1451 219 CDD homeodomain 67 125 IPR001356 GO:0003677(InterPro)
Lcy10g1451 219 Gene3D - 74 120 - -
Lcy10g1451 219 SMART halz 124 167 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g1451 219 Coils Coil 137 157 - -
Lcy10g1451 219 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677(InterPro)
Lcy10g1451 219 Pfam Homeodomain 68 122 IPR001356 GO:0003677(InterPro)
Lcy10g1451 219 Pfam Homeobox associated leucine zipper 124 156 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g1451 219 SUPERFAMILY Homeodomain-like 60 125 IPR009057 -
Lcy10g1451 219 SMART HOX_1 66 128 IPR001356 GO:0003677(InterPro)
Lcy10g1451 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 47 200 IPR050762 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1451 Lcy-Chr10:38288078 Lcy6g1074 Lcy-Chr6:11853768 6.09E-42 dispersed
Lcy10g1451 Lcy-Chr10:38288078 Lcy1g0879 Lcy-Chr1:7567121 7.44E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18996 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1451 K09338 - csv:101206325 299.286