Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1458 ATGGCTTCTTTCTCTTGCCCCGTTCCTTATGTTGTGAGATGTTCCACTGCCAAAGAAGGGAATGATTCTAACAAGCAGAGGTATGTTAGCGTTAATGGGAGTTTTATTGGGTCCATTTCAGAAGCTTCGAGATCTCTGATCGCCTCTGTTGCGGAAAATGGGTGTATTGTTAAAGATGTTCGCCAGAAAATTCCCACGAAGAAGCAGCTGGTTGATCCTCACCGGCAAGGGCTGATCATTGAAGGGGGTGTTGGGTATAGACAAACTGTTGTGATTAGATCGTATGAAGTTGGTCCTGATAAGACTGCAACTCTGGAGAGCGTCATGAATCTTCTGCAGGAAACAGCACTGAATCATGTTTGGATGTCTGGACTTCTCAGCAATGGGTTTGGTGCCACCCATGGCATGATGAAGAACAATCTTATCTGGGTTGTCTCGCGAATGCACGTCGAAGTCGACCACTATCCAATATGGGGGGAGGTTGTTGAAATTGATACATGGGTCGGGGCATCGGGTAAAAATGGAATGAGGAGAGATTGGCTGATTAGAAGTCAAGCCACAGGTCATGTTTATGCTCGAGGTACAAGCACATGGGTGATGATGAACCAGCAAACAAGACGCCTCTCGAAAATGCCAGAAGAGGTAAGGGCAGAGATTTCTCCATGGTTTATAGAAAAGCATGCAATCAAAGAAGATGCCCCCGAGAAAATTTCCAAGTTAGATGACAAAGCTAAGTACATGAACTCTGACTTGAAGCCAAAGAGAAGTGATCTGGACATGAACCACCATGTCAACAATGTCAAGTATCTAAGATGGATGCTAGAGACAATACCCGATCATGTTTTGGAGTCTCATCAACTTTCAAGTATCATATTAGAGTATAGAAGGGAATGCGGAAGCTCTGATATAGTTCAATCACTATGTGAGCCAGAGGAAGATGGAATCCTCAGGGATGTAGACATGATAGAAGATAGTGAAATCAGTCTACTAAATGGGTTTTCCTTGGCATCTGAGATTCTCAAAGGTGGTGGGCTCTTGGGATCTTTGGACAAAGGGACACTGAGGTATACACATCTTCTACAAGTGGAAGGGGAAGCTAAGAATGAAGAGATAGTGAGGGGAAGAACCACATGGAAGAAGAAGCTTACCACTATACCATTTTCCACACAGTAA 1173 44.08 MASFSCPVPYVVRCSTAKEGNDSNKQRYVSVNGSFIGSISEASRSLIASVAENGCIVKDVRQKIPTKKQLVDPHRQGLIIEGGVGYRQTVVIRSYEVGPDKTATLESVMNLLQETALNHVWMSGLLSNGFGATHGMMKNNLIWVVSRMHVEVDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHVYARGTSTWVMMNQQTRRLSKMPEEVRAEISPWFIEKHAIKEDAPEKISKLDDKAKYMNSDLKPKRSDLDMNHHVNNVKYLRWMLETIPDHVLESHQLSSIILEYRRECGSSDIVQSLCEPEEDGILRDVDMIEDSEISLLNGFSLASEILKGGGLLGSLDKGTLRYTHLLQVEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38407436 38410844 + Maker00006955 Lcy10g1458 644969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1458 390 CDD 4HBT 86 202 - -
Lcy10g1458 390 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 85 232 IPR029069 -
Lcy10g1458 390 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 247 378 IPR029069 -
Lcy10g1458 390 Pfam Acyl-ACP thioesterase N-terminal domain 85 219 IPR002864 GO:0006633(InterPro)|GO:0016790(InterPro)
Lcy10g1458 390 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 47 382 IPR045023 GO:0000036(PANTHER)|GO:0006633(InterPro)|GO:0016297(PANTHER)|GO:0016297(InterPro)
Lcy10g1458 390 FunFam Acyl-[acyl-carrier-protein] hydrolase 78 157 - -
Lcy10g1458 390 Pfam Acyl-ACP thioesterase C-terminal domain 243 315 IPR049427 -
Lcy10g1458 390 Gene3D Hotdog Thioesterase 79 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1458 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1458 Lcy-Chr10:38407436 Lcy4g2147 Lcy-Chr4:48011925 1.08E-92 dispersed
Lcy10g1458 Lcy-Chr10:38407436 Lcy2g0794 Lcy-Chr2:7094745 2.40E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008529 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 35