Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1463 ATGCACAAGAGCACCACTTCTGCGTCGAATACTATCGCTGCTGCGACCACTATGTCGTCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCCCCAATCTTTGCTCCCAAGCAATCCGTTCCGGTCTCCCTTCCATTGACTCTCTATGGCGACTCGACTCACCCGGACTCAATCTCCACCTCGAAATCGATAAGCAACCACCTCTACCAAACCCGCGTGGTTCAAGATCACCAGGAAATGGTTAATCGTCATAGCCTCTGTCTCACTCATCTTCGGGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATTCACCTCAGAAGTATTAACCACGAGCTTAGCAAACACTTGAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAGGGATTCCGTGGACTCAGTATCGCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAAGATGTTTCCGATGAGAGTCCGACGAGTGTAATGGAGGGTGGAAGAGTAGAGGGCGTTGAGGTGGAGAGGTTTTCGCTCCCGAAGAGCATCTCCGTTAGATCCAATGGATACTTGAAGATGGCTCAAGGCGGCACCACCCAGGGCGGAAAGGTCCGTGCCTCAACTCGTCCCAGAACTGCGAGTCCTGTCAAGGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAACTGGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAGGAAACGGGCAGCTGCCCATACGGAGACCACTGCCAATTCGCCCACGGAATAGAGGAGCTCCGCCCCGTCATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTCCGCCATGCACTCACTGACCAGGAAAGGCTCATGGGGCCACTCAAGCCCACCTGCAGGACCACCCCCAAGCTCGACAGGTGA 1047 54.35 MHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHPDSISTSKSISNHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFRGLSIAEKGASSSAWEDVSDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQGGTTQGGKVRASTRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGPLKPTCRTTPKLDR 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38557505 38561227 - Maker00006968 Lcy10g1463 644974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1463 348 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872(InterPro)
Lcy10g1463 348 Coils Coil 100 120 - -
Lcy10g1463 348 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872(InterPro)
Lcy10g1463 348 PANTHER CCCH ZINC FINGER/TIS11-RELATED 56 327 IPR045877 GO:0003729(InterPro)
Lcy10g1463 348 SUPERFAMILY CCCH zinc finger 258 293 IPR036855 GO:0046872(InterPro)
Lcy10g1463 348 FunFam zinc finger CCCH domain-containing protein 15-like 255 294 - -
Lcy10g1463 348 Gene3D - 255 294 - -
Lcy10g1463 348 Gene3D - 295 331 - -
Lcy10g1463 348 FunFam Zinc finger protein 36, C3H1 type-like 1 295 331 - -
Lcy10g1463 348 SUPERFAMILY CCCH zinc finger 295 329 IPR036855 GO:0046872(InterPro)
Lcy10g1463 348 SMART c3hfinal6 261 288 IPR000571 GO:0046872(InterPro)
Lcy10g1463 348 SMART c3hfinal6 299 326 IPR000571 GO:0046872(InterPro)
Lcy10g1463 348 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 287 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1957 Lcy-Chr12:40927527 Lcy10g1463 Lcy-Chr10:38557505 8.45E-07 transposed
Lcy10g1463 Lcy-Chr10:38557505 Lcy10g2302 Lcy-Chr10:46636134 1.94E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18997 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1463 K18753 - csv:101203274 628.246