Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1468 ATGCTTGTGGGTCTGTTTCTCATTCTTCTTTGCTGCTCTGATTGTCTTCTTCTTGTGAGTTCTTTGAATGATGAAGGGTTTGTGCTTTTGTCACTCAAGCAGTCCATTTCTCAAGACCCTGATGGGGCTTTGAGCAATTGGGATTCTTCTGATGAAACCCCTTGTTCTTGGAATGGAGTTGGTTGTGTAGAGGAAATCGTTGTTTCTGTTAGTTTTCCTAAGAAGAATTTGTATGGGTTTCTTCCTTCTGCTCTTGGGGCTCTCTCTGGCCTTCGCCATGTGAATTTGAGGAACAATAGGCTTTTTGGGAGCTTGCCTTTTCAGCTCTTCTCTGCTCAAGGGCTACAGAGCTTGGTTCTTTATGGCAATTCCTTTTCTGGGTCTGTTCCAAATGGGATTGGGAAGCTTAAATTCCTTCAAACTCTGGATTTGTCTCAAAATTTCTTTAATGGGTCATTGCCCACTTCGATTATTCAATGCAAGAGACTTAAAACCCTTGATGTTAGTCAGAATAACTTCACTGGTTCATTGCCACATGGGTTTGGAACTAGCTTGAGTTCTTTGGAGAAGCTGGATCTTTCATTTAACAGCTTTGATGGTTCTCTTCCTAGTGATTTGGGGAATTTGTCTAGCTTACAAGGAACTTTTGACTTATCTCATAATCTTTTTTCTGGTTTAATTCCTGCTAGTCTTGGAAACCTACCTGAAAAGGTTTACATTGATCTCAGCTATAACAATTTGAGTGGTCCAATACCTCAAAATGGTGCTCTGATGAACAGAGGACCCACTGCTTTTATTGGGAATCCTGGGCTCTGTGGTTCCCCATTGAAGAACACATGTTCTTCAGAAACTCTAAGTGCAAGCTCACCGTCGTTGCTTCCGTTCCTCCCGGACGATCATTCGCCTGGGATTTCTGGAGACAATGCTGAGAAAGCCAGGGGATTAAGTAAGAGTGCTGTGATTGCAATAGTACTTGGTGATGTGATTGGCATATGTCTAGCTGGGTTATTGTTCTCATATTGTTATTCTAGAGTGTGTAGTCCAAGAAAGAGCAAAGACGAGAGTGCGCGTAGTTCTGATAAGGGGAAAGGAAGGAACGAGTGTTTATGCTTCAGGAAGGATGAATCCGAGACGGTTTCGCAGAATGTGGAGCAGTATGATCTTGTGCCTTTGGATGCACAAGTTGAATTTGATCTTGATGAACTTCTCAAGGCATCAGCATTTGTTCTTGGCAAAAGTGGGATTGGGATAGTGTACAAAGTGGTGCTTGAAGATGGAGTTACGTTGGCCGTGCGACGGTTAGGCGAAGGCGGTTCTCAAAGGTTCAAAGAGTTTCAGACAGAAGTAGAAGCAATAGCAAAGCTAAGGCATCCTAATCTTGTCACTCTTAGAGCCTATTACTGGTCTGTTGAAGAGAAGCTGCTCATTTATGATTTCATACCCAATGGAAACCTTGCCATTGCCATTCATGGAAAGCCGGGAATGGTAGATTTCACGCCGTTATCCTGGTCTGCAAGGTTAAAGATCATGGAAGGAATTGCAAAAGGAATGGTCTATCTCCATGAATTCAGCCCCAAGAAGTATGTTCATGGAGATTTGAAACCCAACAACATACTTCTCACTCAGAACATGGAAGCCAAAATTTCTGACTTCGGCCTTGCTCGACTTGCCAACATTGCAGGAGGAACCCCAACCTTACAATCAAGTCGAGTGGCGTCCGAGAAACCGTTAGATCCAAAGCAACCGAAGACCGTAACATCCGAAACCGTTTGCAGTTCATCTTCCAACACAGGAACTTTTTATCAGGCCCCTGAATCACTCAAAGTCTTAAAACCATCCCAAAAATGGGATGTTTACTCATATGGTGTAATCTTACTTGAAATGATCACTGGAAGATTCCCACTAATCCAAGTGAGTTCTTCCTCTGAAATGGATCTTGTCCATTGGATTCAACTCTGCATTGAAGAACAAAAGCCACTTTCAGAAGTCATAGATCCATATCTAGTTCAAGATGCAGATAAAGAAGAAGAGTTCATATCTGTACTCAAAATTGCAATGGCTTGTGTTCATGGGAGCCCTGAAAGGAGACCTTCCATGAGACACATCTCCGACGCCCTCGAAAGGGTATCATCGGCGTCGAGGAATTAA 2148 42.97 MLVGLFLILLCCSDCLLLVSSLNDEGFVLLSLKQSISQDPDGALSNWDSSDETPCSWNGVGCVEEIVVSVSFPKKNLYGFLPSALGALSGLRHVNLRNNRLFGSLPFQLFSAQGLQSLVLYGNSFSGSVPNGIGKLKFLQTLDLSQNFFNGSLPTSIIQCKRLKTLDVSQNNFTGSLPHGFGTSLSSLEKLDLSFNSFDGSLPSDLGNLSSLQGTFDLSHNLFSGLIPASLGNLPEKVYIDLSYNNLSGPIPQNGALMNRGPTAFIGNPGLCGSPLKNTCSSETLSASSPSLLPFLPDDHSPGISGDNAEKARGLSKSAVIAIVLGDVIGICLAGLLFSYCYSRVCSPRKSKDESARSSDKGKGRNECLCFRKDESETVSQNVEQYDLVPLDAQVEFDLDELLKASAFVLGKSGIGIVYKVVLEDGVTLAVRRLGEGGSQRFKEFQTEVEAIAKLRHPNLVTLRAYYWSVEEKLLIYDFIPNGNLAIAIHGKPGMVDFTPLSWSARLKIMEGIAKGMVYLHEFSPKKYVHGDLKPNNILLTQNMEAKISDFGLARLANIAGGTPTLQSSRVASEKPLDPKQPKTVTSETVCSSSSNTGTFYQAPESLKVLKPSQKWDVYSYGVILLEMITGRFPLIQVSSSSEMDLVHWIQLCIEEQKPLSEVIDPYLVQDADKEEEFISVLKIAMACVHGSPERRPSMRHISDALERVSSASRN 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38633280 38636189 - Maker00006887 Lcy10g1468 644979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1468 715 CDD STKc_IRAK 410 708 - -
Lcy10g1468 715 SUPERFAMILY Protein kinase-like (PK-like) 409 706 IPR011009 -
Lcy10g1468 715 Pfam Protein kinase domain 410 703 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1468 715 Gene3D Phosphorylase Kinase; domain 1 371 479 - -
Lcy10g1468 715 SUPERFAMILY L domain-like 23 277 - -
Lcy10g1468 715 ProSiteProfiles Protein kinase domain profile. 404 709 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1468 715 FunFam Leucine-rich repeat receptor-like protein kinase 22 179 - -
Lcy10g1468 715 SMART serkin_6 409 709 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1468 715 Pfam Leucine Rich Repeat 139 159 IPR001611 GO:0005515(InterPro)
Lcy10g1468 715 Pfam Leucine Rich Repeat 216 234 IPR001611 GO:0005515(InterPro)
Lcy10g1468 715 Pfam Leucine Rich Repeat 162 182 IPR001611 GO:0005515(InterPro)
Lcy10g1468 715 Pfam Leucine Rich Repeat 115 136 IPR001611 GO:0005515(InterPro)
Lcy10g1468 715 Pfam Leucine Rich Repeat 187 209 IPR001611 GO:0005515(InterPro)
Lcy10g1468 715 Gene3D Ribonuclease Inhibitor 77 283 IPR032675 -
Lcy10g1468 715 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Lcy10g1468 715 Gene3D Transferase(Phosphotransferase) domain 1 480 715 - -
Lcy10g1468 715 SMART LRR_typ_2 185 209 IPR003591 -
Lcy10g1468 715 SMART LRR_typ_2 88 112 IPR003591 -
Lcy10g1468 715 SMART LRR_typ_2 136 160 IPR003591 -
Lcy10g1468 715 FunFam Leucine-rich repeat receptor-like protein kinase 387 479 - -
Lcy10g1468 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1468 715 PANTHER OS05G0588300 PROTEIN 159 711 IPR050994 -
Lcy10g1468 715 FunFam Os07g0541700 protein 489 573 - -
Lcy10g1468 715 Gene3D Ribonuclease Inhibitor 18 76 IPR032675 -
Lcy10g1468 715 MobiDBLite consensus disorder prediction 566 590 - -
Lcy10g1468 715 FunFam Leucine-rich repeat receptor-like protein kinase 187 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1468 Lcy-Chr10:38633280 Lcy8g0890 Lcy-Chr8:32132780 9.81E-95 dispersed
Lcy4g1667 Lcy-Chr4:42127091 Lcy10g1468 Lcy-Chr10:38633280 4.25E-42 transposed
Lcy7g0057 Lcy-Chr7:442757 Lcy10g1468 Lcy-Chr10:38633280 7.27E-129 transposed
Lcy9g0615 Lcy-Chr9:20419506 Lcy10g1468 Lcy-Chr10:38633280 4.50E-40 transposed
Lcy10g1468 Lcy-Chr10:38633280 Lcy10g2312 Lcy-Chr10:46762621 7.27E-160 wgd
Lcy10g1468 Lcy-Chr10:38633280 Lcy12g0196 Lcy-Chr12:2415569 1.20E-58 wgd
Lcy10g1468 Lcy-Chr10:38633280 Lcy13g1363 Lcy-Chr13:31701227 1.22E-33 wgd
Lcy10g1468 Lcy-Chr10:38633280 Lcy7g0496 Lcy-Chr7:4404296 2.33E-263 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65395 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1468 - - - 0.0