Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1474 ATGAGTGGCGGCGGCAGTGGCACTTCTCGAAGCACCAGGGATTTGATCTGCCACGCCGGTGCCGGTGCTGCTGCAGGTACTATAGCAGCCACGTTCGTCTGCCCTTTAGATGTGATCAAGACGAGGCTGCAAGTGCATGGCCTTCCATCTGGTCAAAGAGGAGGTAGTATTATTATCACTAGCCTACAAGACATAATGCGTTCTGAAGGTTTCAGGGGAATGTACCGTGGGCTTTCACCAACAATAGTAGCACTTCTTCCAAACTGGGCTGTGAGTATTTCATTGGAAATTCCTGTGGAAAGTAGCATTAAGAGCTTTCATTTTTTCCAAACAGATGTATCAATTTTATGGTTGGACCTTAGTGGGATAAAGAGTTACATTCACGCTTTACTGTGGGATGTTATGCTGACCTTTCTATTTCGTGCTAATGTCTACTTCACAGTTTATGAGCATCTAAAAGGCCTACTTCATACAGATGGGGATGGTGGTCAACTCTCATTTGGGACAAATATGGTTGTTGCTGCTGGCGCTGGGGCATCTACTGCCATTGCAACAAATCCTTTGTGGGTTGTTAAGACCAGACTCCAAACCCAGGGAATGAGGCCTGGCGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATCATACAGGAGGAAGGAATCCGTGGCCTTTACAGTGGTATCATCCCTTCATTGGTTGGGATAAGTCATGTTGCAATTCAATTTCCCGCATACGAAAAGCTCAAATCATATATGGCAAAAAGAGATAACACAACCGTTGAAAAGCTAAGTCCAGGAAATTTAGCTATTGCTTCCTCATTGTCGAAAATTACGGCCTCGGTAACAACTTACCCACATGAGGTAATTCGTTCCCGGCTGCAAGAGCAAGGCCAAGCCAGAAACATTGCTCCTCAATACTCAGGAGTAATGGACTGTATCAAAAAGGTTTTCCAAAAGGAAGGTCTCCCCGGTTTTTATAGGGGTTGTGCGACGAATCTGTTGCGAACAACTCCATCAGCTGTAATAACCTTCACCAGCTATGAGATGATACATAGGTTCCTACTGCAAGTTATACCTCCAAGCGAGGAGAAATATTCCGAAACTCATCTGAATTCAGCTAGCCACGTGAAGCCCCAAAAGGCAAACAGAGACAACTCGAAGGAAGATAGCGATTCCGGCATACAACAATCACAATCCCAACCAAGTAAGCAAACTAGAATTCCTCTGGGGAACAAAGAACAGTTAACATCTAGACACTGA 1266 45.1 MSGGGSGTSRSTRDLICHAGAGAAAGTIAATFVCPLDVIKTRLQVHGLPSGQRGGSIIITSLQDIMRSEGFRGMYRGLSPTIVALLPNWAVSISLEIPVESSIKSFHFFQTDVSILWLDLSGIKSYIHALLWDVMLTFLFRANVYFTVYEHLKGLLHTDGDGGQLSFGTNMVVAAGAGASTAIATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIIQEEGIRGLYSGIIPSLVGISHVAIQFPAYEKLKSYMAKRDNTTVEKLSPGNLAIASSLSKITASVTTYPHEVIRSRLQEQGQARNIAPQYSGVMDCIKKVFQKEGLPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLQVIPPSEEKYSETHLNSASHVKPQKANRDNSKEDSDSGIQQSQSQPSKQTRIPLGNKEQLTSRH 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38759951 38765585 - Maker00007005 Lcy10g1474 644985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1474 421 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 91 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(PANTHER)|GO:0055085(InterPro)
Lcy10g1474 421 SUPERFAMILY Mitochondrial carrier 137 351 IPR023395 -
Lcy10g1474 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 102 IPR018108 -
Lcy10g1474 421 SUPERFAMILY Mitochondrial carrier 15 92 IPR023395 -
Lcy10g1474 421 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 100 356 - -
Lcy10g1474 421 Gene3D Mitochondrial carrier domain 115 361 IPR023395 -
Lcy10g1474 421 Gene3D Mitochondrial carrier domain 5 114 IPR023395 -
Lcy10g1474 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 165 253 IPR018108 -
Lcy10g1474 421 Pfam Mitochondrial carrier protein 16 93 IPR018108 -
Lcy10g1474 421 Pfam Mitochondrial carrier protein 264 357 IPR018108 -
Lcy10g1474 421 Pfam Mitochondrial carrier protein 164 256 IPR018108 -
Lcy10g1474 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 265 355 IPR018108 -
Lcy10g1474 421 MobiDBLite consensus disorder prediction 368 421 - -
Lcy10g1474 421 MobiDBLite consensus disorder prediction 393 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1474 Lcy-Chr10:38759951 Lcy3g1776 Lcy-Chr3:45027458 1.22E-124 dispersed
Lcy10g1474 Lcy-Chr10:38759951 Lcy7g0917 Lcy-Chr7:9259311 3.81E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1474 K15115 - csv:101216902 600.512