Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1475 ATGAAGAGCCAAATTCAGATCCCAAAGATCATCCAAATCCACCTGAGCTTCTTCAACGTCGTCCCTTACATCCTCCTCTTCACCGCCGGAATCACCGCCGGAGTTTGCCTCACTTTCTACCTCTCTAATTTCTCCATCAGCTTAAACCTCACCCAGATCCCCTCCACGAGTTTCTCTCCGGTGAGCGGGCGGGTCGGGTTGGAGGAGTATCTGAAGCCGCCAGAAGTAATGCACGACATGGAGGAGGAGGAGCTTCTGTGGAGAGCTTCAATGGCGGCCGGAATTCGGAAATTTCCGTTCCGGCGAGTTCCGAAGGTGGCGTTCATGTTCTTGACTCGAGGGCCGGTGTACTTGGCTCCTCTTTGGGAAGAGTTCTTCAAGGGAAATGAAGGGCTTTACTCTGTTTATGTTCATTCCGATCCTTCTTATAATCTCTCTTTCCCTGAAAGCCCTGTTTTCCATGGCCGGAGAATTCCCAGCAAGAAAGTAGGATGGGGGAAGGTAAACATGATCGAGGCAGAACGTCGTCTACTATCAAACGCACTTTTCGACATTTCAAATGAGCGATTCGTTCTCCTCTCAGAAGCCTGCATTCCTCTCTTCAACTTCTCCACAATCTACTCCTTCCTCATTAACTCCACCATGAAAAGCTTCATCATGAGCTACGACGAACCGGGCAACGTCGGTCGTGGTCGATACTCGAACAAAATGTTCCCGCCGATCTCCCTAAAACAATGGCGAAAAGGGTCGCAGTGGTTCGAGATGGACCGAGACACCGCGATCGCCGTCGTCTCGGATCGAAAATACTTCCCCGTCTTCCAGAAGTACTGCAAAGGCCAATGCTATTCCGACGAGCACTACTTGCCGACGTTGGTCAATGTTTTGGGCTGGGAGAGGAATGGCGATAGAAGTTTGACCTGGGTTGACTGGTCAAAGGGTGGCCCACATCCAACTAGATTTTCGCGATCGGATATCAACGTGGAGCTATTTCAGAGGCTAAGGAATCAAACCGGCGAGTGTACAAAAAGTAAAATGGAGGGGACAGGTGTCTGCTTCCTATTCGCCAGAAAGTTCGCTCCAAATACTTTGGAGAGGTTAATGAAGATTGCACCAAAAGCCATGCACTTTGGGAGATAG 1137 49.96 MKSQIQIPKIIQIHLSFFNVVPYILLFTAGITAGVCLTFYLSNFSISLNLTQIPSTSFSPVSGRVGLEEYLKPPEVMHDMEEEELLWRASMAAGIRKFPFRRVPKVAFMFLTRGPVYLAPLWEEFFKGNEGLYSVYVHSDPSYNLSFPESPVFHGRRIPSKKVGWGKVNMIEAERRLLSNALFDISNERFVLLSEACIPLFNFSTIYSFLINSTMKSFIMSYDEPGNVGRGRYSNKMFPPISLKQWRKGSQWFEMDRDTAIAVVSDRKYFPVFQKYCKGQCYSDEHYLPTLVNVLGWERNGDRSLTWVDWSKGGPHPTRFSRSDINVELFQRLRNQTGECTKSKMEGTGVCFLFARKFAPNTLERLMKIAPKAMHFGR 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38786814 38789466 - Maker00006912 Lcy10g1475 644986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1475 378 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 36 372 IPR044174 GO:0016757(InterPro)
Lcy10g1475 378 Pfam Core-2/I-Branching enzyme 106 334 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1475 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1475 Lcy-Chr10:38786814 Lcy5g2413 Lcy-Chr5:46931138 1.64E-128 dispersed
Lcy10g1475 Lcy-Chr10:38786814 Lcy10g1476 Lcy-Chr10:38799416 1.33E-17 tandem
Lcy10g1655 Lcy-Chr10:40953807 Lcy10g1475 Lcy-Chr10:38786814 6.91E-49 transposed
Lcy2g1353 Lcy-Chr2:15352787 Lcy10g1475 Lcy-Chr10:38786814 1.60E-47 transposed
Lcy10g1475 Lcy-Chr10:38786814 Lcy13g1332 Lcy-Chr13:31126539 1.12E-65 wgd
Lcy10g1475 Lcy-Chr10:38786814 Lcy2g0423 Lcy-Chr2:3534852 4.68E-127 wgd
Lcy10g1475 Lcy-Chr10:38786814 Lcy5g2412 Lcy-Chr5:46925131 1.37E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g340 Blo01g00733 . Bda01g01847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0449 . Csa05g02066 . . . . . . . Bpe02g02024 . . . . Cmo15g00962 . Cma15g00923 . Car15g00865 Cpe13g00397 . Bhi12g00834 . . . . . Lcy10g1475 Cla01g00570 Cam01g0596 Cec01g0585 Cco01g0611 Clacu01g0589 Cmu01g0561 Cre09g1946 Lsi09g00618 . Chy09g00894 Cme09g01427
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002751 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 57