Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g1488 | ATGCGATACCTCTCCCCCTCAAAGTCTCACTCTCTCGGCTTCCCTCTCCCCCTTCATCTCCGATCTCTTCCTCACTGTGCAGCCGCCGTCGACGACCAGCCAACGCCGGATAAGCGCCGTCGTCGCCGCGAACCCGGAACCAGCAGCCGACCCGGAACACGCCGCAGCCCAGCAAGCCCACCGGCCCTCCTGCTGCTGCCGTTTCCGCCGAGGGTACTGCTGCACCTCGCCGCCGCCGCTCAGCCTCTCTCCGCGACTGCCGTTTGCTTGAAGCATTACCCATCAAGTTTCGACTCCAGAATTGTATATTTTCGCCAATTTAAGGTCCTGCGGCTATTTCGGTATCCATGGATATTAATTGATGAGTTGGATGCTATTGCGCCAGCAAGAAAAGATGGAGGTGAAGAACTGTCTCAAAGAATTGTTGCTACATTGCTTAATCTGATGGATGGGATCAACCGAGGTGGTGGCCCACTTATAATTGCTTCTACCAACAGGCCTGAAAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTACCATCTCCCAATCAACGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGACCTGCAAGTTCAACATCTATCCATGGTTACTCATGGTTTTGTGGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCTTTAGTTTGTATGAGGCGTTATCACAAGTTTAAAATTTCTACCGATTGCTTTAGTTCTAGTAGATCCGTTATAACTGAGGAACAACAGAAGCTCACCAAGGTGGAACACAAAACCAATGTTGATGATATGATTTTAGAACCTGTTCTCTCAAAAGATGCGGGAAATATATCAGGGTCCTCAAATGAAGTGGTAGCGGATTGTGAGGATATTTTTAACTCTTCAGAAATCAAGTGTAGATTGAATGTTGTTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGCGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTTAAGATTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGACGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGCTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAAGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCGGTTAGATCTCTATTTGCTAAGACAAGAGCCAATGCCCCATCCATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGATGTTACTGTCATTGCAGCTACCAATAGGCCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCGGTTGCTATATGTTGGGCCTCCAAATGAATCTGAACAAGAAGAGATATTTCGTATCCATTTGTGTAAAGTTCCTTGTAGCTCACATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGCTGTACTGGGGCTGACATATCATTAATATGCAGAGAAGCCGCTTTATTTGCTCTTGAGGTTTTCTACTCGCTTGCTGGAAGCTCATGGGTTCTCACGAATGGAAGCCAGACGGAGGAGAAAGAGGGCGCCACCACCACTGTTAGCCTTGCTGGAGATAATGGCTTAATGGCAAAGCAAGCCTCTAAGGGCCCTTCTGGAGTGGGGCTGTCTAAAGTGTTGGCCACATTTTCCAAGTTCTATACAAGGAAAAATTCATCTGACCCTTCATTTTCTATGAGTTCAGAATCTTCTTTTAATAAGGATGTAACTGAAGAGGTTGCTGCCCGATTTAAGACACCATCTAAGCTTCTGGTTCTGGTACAAGTTGGTCGTCCGATAATGATGGAACAGAAAAAAGCCATAGTGGCAGCCTTGCTACGTCAAGTGACACCATTGGTGGGGAATTTGTTCTAG | 2109 | 46.23 | MRYLSPSKSHSLGFPLPLHLRSLPHCAAAVDDQPTPDKRRRRREPGTSSRPGTRRSPASPPALLLLPFPPRVLLHLAAAAQPLSATAVCLKHYPSSFDSRIVYFRQFKVLRLFRYPWILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRGGGPLIIASTNRPESIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSDLQVQHLSMVTHGFVGADLAALCNEAALVCMRRYHKFKISTDCFSSSRSVITEEQQKLTKVEHKTNVDDMILEPVLSKDAGNISGSSNEVVADCEDIFNSSEIKCRLNVVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQREVKIQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKTRANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVDVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEQEEIFRIHLCKVPCSSHVSTRKLASLTQGCTGADISLICREAALFALEVFYSLAGSSWVLTNGSQTEEKEGATTTVSLAGDNGLMAKQASKGPSGVGLSKVLATFSKFYTRKNSSDPSFSMSSESSFNKDVTEEVAARFKTPSKLLVLVQVGRPIMMEQKKAIVAALLRQVTPLVGNLF | 702 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 39074011 | 39086609 | - | Maker00006842 | Lcy10g1488 | 644999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g1488 | 702 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 344 | 570 | IPR027417 | - | |
Lcy10g1488 | 702 | Gene3D | - | 95 | 188 | IPR027417 | - | |
Lcy10g1488 | 702 | Gene3D | - | 519 | 574 | - | - | |
Lcy10g1488 | 702 | MobiDBLite | consensus disorder prediction | 29 | 61 | - | - | |
Lcy10g1488 | 702 | PANTHER | AAA-FAMILY ATPASE | 118 | 644 | IPR050168 | GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER) | |
Lcy10g1488 | 702 | MobiDBLite | consensus disorder prediction | 32 | 49 | - | - | |
Lcy10g1488 | 702 | FunFam | calmodulin-interacting protein 111 isoform X1 | 343 | 518 | - | - | |
Lcy10g1488 | 702 | Pfam | AAA+ lid domain | 541 | 570 | IPR041569 | - | |
Lcy10g1488 | 702 | Pfam | AAA+ lid domain | 212 | 255 | IPR041569 | - | |
Lcy10g1488 | 702 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 105 | 259 | IPR027417 | - | |
Lcy10g1488 | 702 | ProSitePatterns | AAA-protein family signature. | 488 | 506 | IPR003960 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Lcy10g1488 | 702 | Pfam | ATPase family associated with various cellular activities (AAA) | 386 | 517 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Lcy10g1488 | 702 | Pfam | ATPase family associated with various cellular activities (AAA) | 118 | 187 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Lcy10g1488 | 702 | CDD | RecA-like_CDC48_r2-like | 357 | 516 | - | - | |
Lcy10g1488 | 702 | Gene3D | - | 189 | 333 | - | - | |
Lcy10g1488 | 702 | Gene3D | - | 343 | 518 | IPR027417 | - | |
Lcy10g1488 | 702 | SMART | AAA_5 | 69 | 190 | IPR003593 | GO:0016887(InterPro) | |
Lcy10g1488 | 702 | SMART | AAA_5 | 382 | 520 | IPR003593 | GO:0016887(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0995 | Lcy-Chr10:31903416 | Lcy10g1488 | Lcy-Chr10:39074011 | 7.42E-274 | dispersed | |
Lcy10g1488 | Lcy-Chr10:39074011 | Lcy3g1229 | Lcy-Chr3:37830491 | 2.38E-301 | dispersed | |
Lcy10g0993 | Lcy-Chr10:31892921 | Lcy10g1488 | Lcy-Chr10:39074011 | 6.73E-63 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g1488 | - | - | - | 0.0 |