Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1488 ATGCGATACCTCTCCCCCTCAAAGTCTCACTCTCTCGGCTTCCCTCTCCCCCTTCATCTCCGATCTCTTCCTCACTGTGCAGCCGCCGTCGACGACCAGCCAACGCCGGATAAGCGCCGTCGTCGCCGCGAACCCGGAACCAGCAGCCGACCCGGAACACGCCGCAGCCCAGCAAGCCCACCGGCCCTCCTGCTGCTGCCGTTTCCGCCGAGGGTACTGCTGCACCTCGCCGCCGCCGCTCAGCCTCTCTCCGCGACTGCCGTTTGCTTGAAGCATTACCCATCAAGTTTCGACTCCAGAATTGTATATTTTCGCCAATTTAAGGTCCTGCGGCTATTTCGGTATCCATGGATATTAATTGATGAGTTGGATGCTATTGCGCCAGCAAGAAAAGATGGAGGTGAAGAACTGTCTCAAAGAATTGTTGCTACATTGCTTAATCTGATGGATGGGATCAACCGAGGTGGTGGCCCACTTATAATTGCTTCTACCAACAGGCCTGAAAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTACCATCTCCCAATCAACGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGACCTGCAAGTTCAACATCTATCCATGGTTACTCATGGTTTTGTGGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCTTTAGTTTGTATGAGGCGTTATCACAAGTTTAAAATTTCTACCGATTGCTTTAGTTCTAGTAGATCCGTTATAACTGAGGAACAACAGAAGCTCACCAAGGTGGAACACAAAACCAATGTTGATGATATGATTTTAGAACCTGTTCTCTCAAAAGATGCGGGAAATATATCAGGGTCCTCAAATGAAGTGGTAGCGGATTGTGAGGATATTTTTAACTCTTCAGAAATCAAGTGTAGATTGAATGTTGTTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGCGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTTAAGATTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGACGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGCTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAAGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCGGTTAGATCTCTATTTGCTAAGACAAGAGCCAATGCCCCATCCATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGATGTTACTGTCATTGCAGCTACCAATAGGCCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCGGTTGCTATATGTTGGGCCTCCAAATGAATCTGAACAAGAAGAGATATTTCGTATCCATTTGTGTAAAGTTCCTTGTAGCTCACATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGCTGTACTGGGGCTGACATATCATTAATATGCAGAGAAGCCGCTTTATTTGCTCTTGAGGTTTTCTACTCGCTTGCTGGAAGCTCATGGGTTCTCACGAATGGAAGCCAGACGGAGGAGAAAGAGGGCGCCACCACCACTGTTAGCCTTGCTGGAGATAATGGCTTAATGGCAAAGCAAGCCTCTAAGGGCCCTTCTGGAGTGGGGCTGTCTAAAGTGTTGGCCACATTTTCCAAGTTCTATACAAGGAAAAATTCATCTGACCCTTCATTTTCTATGAGTTCAGAATCTTCTTTTAATAAGGATGTAACTGAAGAGGTTGCTGCCCGATTTAAGACACCATCTAAGCTTCTGGTTCTGGTACAAGTTGGTCGTCCGATAATGATGGAACAGAAAAAAGCCATAGTGGCAGCCTTGCTACGTCAAGTGACACCATTGGTGGGGAATTTGTTCTAG 2109 46.23 MRYLSPSKSHSLGFPLPLHLRSLPHCAAAVDDQPTPDKRRRRREPGTSSRPGTRRSPASPPALLLLPFPPRVLLHLAAAAQPLSATAVCLKHYPSSFDSRIVYFRQFKVLRLFRYPWILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRGGGPLIIASTNRPESIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSDLQVQHLSMVTHGFVGADLAALCNEAALVCMRRYHKFKISTDCFSSSRSVITEEQQKLTKVEHKTNVDDMILEPVLSKDAGNISGSSNEVVADCEDIFNSSEIKCRLNVVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQREVKIQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKTRANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVDVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEQEEIFRIHLCKVPCSSHVSTRKLASLTQGCTGADISLICREAALFALEVFYSLAGSSWVLTNGSQTEEKEGATTTVSLAGDNGLMAKQASKGPSGVGLSKVLATFSKFYTRKNSSDPSFSMSSESSFNKDVTEEVAARFKTPSKLLVLVQVGRPIMMEQKKAIVAALLRQVTPLVGNLF 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39074011 39086609 - Maker00006842 Lcy10g1488 644999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1488 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 570 IPR027417 -
Lcy10g1488 702 Gene3D - 95 188 IPR027417 -
Lcy10g1488 702 Gene3D - 519 574 - -
Lcy10g1488 702 MobiDBLite consensus disorder prediction 29 61 - -
Lcy10g1488 702 PANTHER AAA-FAMILY ATPASE 118 644 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Lcy10g1488 702 MobiDBLite consensus disorder prediction 32 49 - -
Lcy10g1488 702 FunFam calmodulin-interacting protein 111 isoform X1 343 518 - -
Lcy10g1488 702 Pfam AAA+ lid domain 541 570 IPR041569 -
Lcy10g1488 702 Pfam AAA+ lid domain 212 255 IPR041569 -
Lcy10g1488 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 259 IPR027417 -
Lcy10g1488 702 ProSitePatterns AAA-protein family signature. 488 506 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g1488 702 Pfam ATPase family associated with various cellular activities (AAA) 386 517 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g1488 702 Pfam ATPase family associated with various cellular activities (AAA) 118 187 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g1488 702 CDD RecA-like_CDC48_r2-like 357 516 - -
Lcy10g1488 702 Gene3D - 189 333 - -
Lcy10g1488 702 Gene3D - 343 518 IPR027417 -
Lcy10g1488 702 SMART AAA_5 69 190 IPR003593 GO:0016887(InterPro)
Lcy10g1488 702 SMART AAA_5 382 520 IPR003593 GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0995 Lcy-Chr10:31903416 Lcy10g1488 Lcy-Chr10:39074011 7.42E-274 dispersed
Lcy10g1488 Lcy-Chr10:39074011 Lcy3g1229 Lcy-Chr3:37830491 2.38E-301 dispersed
Lcy10g0993 Lcy-Chr10:31892921 Lcy10g1488 Lcy-Chr10:39074011 6.73E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1488 - - - 0.0