Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g1489 | ATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAGAAAACCCACGAAGAATAAAAACATCAGAAAACGGACGGTTGATGAAGATGAAGAGGAGGACTCTAAAACTGAGACTTCGTTCCTGGCTAATCAGAAAAAAGCTCCCAAGACTGAGAGCAAGCTTTATTTCTCTTCTGGACCCTCAAAAAGTTCCTTGTCTAATGAGTCAAATGCGGAGCCTGAAAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCAACTGCAACTCTGGAAACAGAGACTGAGTTCTCAAGAGATGCACGAGCTATCCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGAAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACACACAATTTCAAGTGAAAAAGCTGGTGGAGCACACGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGGGATTACAAATCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTAGAGAAAGCAAGGAAGAGAAAATTAGCTATGGGTTCTGATGATGGGGATGAGGATGCTGCAGAACAGAGTGATGAAGATGATGAAGATGCCCTTCCCTTCGCTTGTTTTATTTGCCGTGAGCCATTTGTGGACCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAACACTGTGCGCTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAACCAGCCTACGCTTGGAATCTTTAACACGGCTCATGAGATACGGAAAAAGATGGCACAAAGTAAATAA | 969 | 43.45 | MTDTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKTETSFLANQKKAPKTESKLYFSSGPSKSSLSNESNAEPEKPIFQFESSKEIQVHHDSRATATLETETEFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMGSDDGDEDAAEQSDEDDEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKKMAQSK | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 39099372 | 39102979 | - | Maker00006865 | Lcy10g1489 | 645000 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g1489 | 322 | ProSitePatterns | Zinc finger RING-type signature. | 278 | 287 | IPR017907 | - | |
Lcy10g1489 | 322 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 261 | 320 | IPR013083 | - | |
Lcy10g1489 | 322 | Pfam | Zinc finger, C3HC4 type (RING finger) | 262 | 304 | - | - | |
Lcy10g1489 | 322 | SMART | c3hfinal6 | 185 | 212 | IPR000571 | GO:0046872(InterPro) | |
Lcy10g1489 | 322 | FunFam | Zinc finger CCCH domain-containing protein 1 | 183 | 217 | - | - | |
Lcy10g1489 | 322 | PANTHER | ZINC FINGER PROTEIN 183 | 12 | 321 | IPR039971 | GO:0005684(PANTHER)|GO:0034247(PANTHER) | |
Lcy10g1489 | 322 | ProSiteProfiles | Zinc finger RING-type profile. | 263 | 301 | IPR001841 | - | |
Lcy10g1489 | 322 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Lcy10g1489 | 322 | Gene3D | - | 183 | 217 | - | - | |
Lcy10g1489 | 322 | ProSiteProfiles | Zinc finger C3H1-type profile. | 185 | 213 | IPR000571 | GO:0046872(InterPro) | |
Lcy10g1489 | 322 | MobiDBLite | consensus disorder prediction | 45 | 78 | - | - | |
Lcy10g1489 | 322 | MobiDBLite | consensus disorder prediction | 1 | 106 | - | - | |
Lcy10g1489 | 322 | FunFam | RING finger protein 113A | 261 | 320 | - | - | |
Lcy10g1489 | 322 | SMART | ring_2 | 263 | 300 | IPR001841 | - | |
Lcy10g1489 | 322 | MobiDBLite | consensus disorder prediction | 234 | 253 | - | - | |
Lcy10g1489 | 322 | SUPERFAMILY | CCCH zinc finger | 184 | 216 | IPR036855 | GO:0046872(InterPro) | |
Lcy10g1489 | 322 | SUPERFAMILY | RING/U-box | 262 | 306 | - | - | |
Lcy10g1489 | 322 | CDD | RING-HC_RNF113A_B | 256 | 309 | - | - | |
Lcy10g1489 | 322 | MobiDBLite | consensus disorder prediction | 89 | 106 | - | - | |
Lcy10g1489 | 322 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 186 | 211 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1489 | Lcy-Chr10:39099372 | Lcy12g0794 | Lcy-Chr12:10340189 | 5.75E-102 | dispersed | |
Lcy10g0992 | Lcy-Chr10:31874936 | Lcy10g1489 | Lcy-Chr10:39099372 | 3.02E-234 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19000 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g1489 | K13127 | - | csv:101221334 | 605.134 |