Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1489 ATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAGAAAACCCACGAAGAATAAAAACATCAGAAAACGGACGGTTGATGAAGATGAAGAGGAGGACTCTAAAACTGAGACTTCGTTCCTGGCTAATCAGAAAAAAGCTCCCAAGACTGAGAGCAAGCTTTATTTCTCTTCTGGACCCTCAAAAAGTTCCTTGTCTAATGAGTCAAATGCGGAGCCTGAAAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCAACTGCAACTCTGGAAACAGAGACTGAGTTCTCAAGAGATGCACGAGCTATCCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGAAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACACACAATTTCAAGTGAAAAAGCTGGTGGAGCACACGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGGGATTACAAATCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTAGAGAAAGCAAGGAAGAGAAAATTAGCTATGGGTTCTGATGATGGGGATGAGGATGCTGCAGAACAGAGTGATGAAGATGATGAAGATGCCCTTCCCTTCGCTTGTTTTATTTGCCGTGAGCCATTTGTGGACCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAACACTGTGCGCTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAACCAGCCTACGCTTGGAATCTTTAACACGGCTCATGAGATACGGAAAAAGATGGCACAAAGTAAATAA 969 43.45 MTDTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKTETSFLANQKKAPKTESKLYFSSGPSKSSLSNESNAEPEKPIFQFESSKEIQVHHDSRATATLETETEFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMGSDDGDEDAAEQSDEDDEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKKMAQSK 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39099372 39102979 - Maker00006865 Lcy10g1489 645000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1489 322 ProSitePatterns Zinc finger RING-type signature. 278 287 IPR017907 -
Lcy10g1489 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 320 IPR013083 -
Lcy10g1489 322 Pfam Zinc finger, C3HC4 type (RING finger) 262 304 - -
Lcy10g1489 322 SMART c3hfinal6 185 212 IPR000571 GO:0046872(InterPro)
Lcy10g1489 322 FunFam Zinc finger CCCH domain-containing protein 1 183 217 - -
Lcy10g1489 322 PANTHER ZINC FINGER PROTEIN 183 12 321 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
Lcy10g1489 322 ProSiteProfiles Zinc finger RING-type profile. 263 301 IPR001841 -
Lcy10g1489 322 MobiDBLite consensus disorder prediction 1 19 - -
Lcy10g1489 322 Gene3D - 183 217 - -
Lcy10g1489 322 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872(InterPro)
Lcy10g1489 322 MobiDBLite consensus disorder prediction 45 78 - -
Lcy10g1489 322 MobiDBLite consensus disorder prediction 1 106 - -
Lcy10g1489 322 FunFam RING finger protein 113A 261 320 - -
Lcy10g1489 322 SMART ring_2 263 300 IPR001841 -
Lcy10g1489 322 MobiDBLite consensus disorder prediction 234 253 - -
Lcy10g1489 322 SUPERFAMILY CCCH zinc finger 184 216 IPR036855 GO:0046872(InterPro)
Lcy10g1489 322 SUPERFAMILY RING/U-box 262 306 - -
Lcy10g1489 322 CDD RING-HC_RNF113A_B 256 309 - -
Lcy10g1489 322 MobiDBLite consensus disorder prediction 89 106 - -
Lcy10g1489 322 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1489 Lcy-Chr10:39099372 Lcy12g0794 Lcy-Chr12:10340189 5.75E-102 dispersed
Lcy10g0992 Lcy-Chr10:31874936 Lcy10g1489 Lcy-Chr10:39099372 3.02E-234 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19000 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1489 K13127 - csv:101221334 605.134