Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1527 ATGTTGATTCTTTTGTGTCTTTTTAGAGCCATTCTTTTAGCAGTTGGGGCCTCAAGGAATGTTGAGTTAGCGACTGCTAGTTTAATGGAAATTAGGAGAGAAAATGGGTTACTGCCTTGTTTGGCTTTGCTTTGGTTATGGGCTTCCGTAAGTGCGGCTTCAACAGCCAAAGATTTAACCTCTGAAGTTCAAGCTTTGATGGGGATCAAAGCTACTTTGAAGGATCCTCATTCAGTTCTGACTTGGGATGAAAATGCTGTGGATCCATGCACTTGGAATTTGATCACTTGTTCTCCTGATAAACTTGTCATTGGCATAGGAGCTCCAAGCCAAAACTTATCTGGTACACTCTCACCAAGTATTGGAAATTTGACAAACCTCCAATTTCTGCTTCTTCAGGATAACAATATATCAGGAAAAATTCCAAACGAAATTAGCAAGATACCTAGACTTCATACACTTGATCTTTCCAGCAACTTGCTCTCTGGTGAAATTCCCAGCTCTTTCTCCAATATGAAAAGCCTCCAATACCTGAGACTCAACAATAACACCTTCTCTGGGCCAATACCGTCATCACTGGCTAACATGACCCAGCTAGCCTTGCTGGACCTGTCCTATAATAACTTGAGCGGTCCTGTGCCCAGATTGCTGGCTAAGACATTTAACTTTACTGGAAACTCTTTGATTTGTGACCCTGGAACAAAGGAAGTATGCTATGGAACAACTCCATTGCCACTTTCTTTCGCTGTTACTAATTCCACATACTCCCAACCTCCAAGGAGACATAAAGGCCAGAGAATTGCCTTAGTCATTGGTCTTAGCTTGGGTTGCATCTGTCTGATAACTCTTGTATATGGTTTCTTTATCTGGCGGAAGCATAGACACAACCAGCAAATATTCTTCGAAGATCGGATCCGGGAAGAACTTAGCCTAGGGAATGTAAAGAGGTTTCAGTTCAGAGAACTTCAGAATGCCACTCACAACTTCAGCAGTAAGAACTTGATTGGAAAAGGTGGTTTTGGAAATGTATACAGAGGATATCTACAAGATGGCACCATTGTAGCTGTCAAGAGACTCAAAGATGGGAACGCTATGAGAGGAGAGATCCAGTTTCAGACTGAAGTGGAGATGATAAGCTTGGCAGTGCATAGGAACCTCCTCAGGTTGTATGGTTTTTGTATGACAGAAACCGAGAGGCTTTTGGTCTATCCATATATGTCCAATGGCAGTGTCGCTACCCGTCTTAAAGCAAAACCAGCTCTGGATTGGGGTACAAGGAAGAGAATTGCCTTGGGAGCGGCTAGGGGCTTGTTATACTTACATGAACAGTGTGATCCAAAAATAATTCACAGGGATGTAAAAGCTGCAAATATACTGCTTGATGATTTCTGTGAGGCAGTGGTCGGTGATTTCGGGCTGGCAAAGCTGTTAGATCACACAGATTCACATGTCACTACTGCAGTGAGGGGAACTGTTGGGCACATTGCACCAGAGTATCTGTCAACTGGCCAATCCTCAGAGAAAACAGATGTTTTTGGGTTTGGAATTCTATTACTTGAGCTCGTATCAGGTCAAAGAGCTCTCGAGTTTGGAAAAGCAGCAAACCAAAAGGGTGCAATACTGGACTGGATAAAGAAGCTACACCAAGAAAAGAAGCTAGAAATGCTTGTTGACAAAGACTTGAGAGGCAATTACGACCCAATTGAACTTGAAGAAATTGTTCGAGTAGCTCTCTTGTGCATCCAATATCTTCCAAGCCACAGGCCTAAGATGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGGCTGGCAGAGAAATGGGAAGCTTCCCAAAGAGCAGAAGCAAGCAGGGGCAGAGCCAACGAGTTCTCTTCCTCAGAACGTTACTCTGATCTTACTGATGACTCTTCATTGTTTGCTCAAGCAATAGAGCTCTCGGGACCAAGATAA 1950 43.38 MLILLCLFRAILLAVGASRNVELATASLMEIRRENGLLPCLALLWLWASVSAASTAKDLTSEVQALMGIKATLKDPHSVLTWDENAVDPCTWNLITCSPDKLVIGIGAPSQNLSGTLSPSIGNLTNLQFLLLQDNNISGKIPNEISKIPRLHTLDLSSNLLSGEIPSSFSNMKSLQYLRLNNNTFSGPIPSSLANMTQLALLDLSYNNLSGPVPRLLAKTFNFTGNSLICDPGTKEVCYGTTPLPLSFAVTNSTYSQPPRRHKGQRIALVIGLSLGCICLITLVYGFFIWRKHRHNQQIFFEDRIREELSLGNVKRFQFRELQNATHNFSSKNLIGKGGFGNVYRGYLQDGTIVAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHTDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELVSGQRALEFGKAANQKGAILDWIKKLHQEKKLEMLVDKDLRGNYDPIELEEIVRVALLCIQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEASRGRANEFSSSERYSDLTDDSSLFAQAIELSGPR 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39732833 39737155 + Maker00006899 Lcy10g1527 645038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1527 649 FunFam Somatic embryogenesis receptor kinase 1 299 405 - -
Lcy10g1527 649 Pfam Leucine Rich Repeat 126 147 IPR001611 GO:0005515(InterPro)
Lcy10g1527 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1527 649 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 43 649 - -
Lcy10g1527 649 Pfam Leucine rich repeat 149 209 IPR001611 GO:0005515(InterPro)
Lcy10g1527 649 SUPERFAMILY L domain-like 61 228 - -
Lcy10g1527 649 SUPERFAMILY Protein kinase-like (PK-like) 309 599 IPR011009 -
Lcy10g1527 649 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524(InterPro)
Lcy10g1527 649 Gene3D Transferase(Phosphotransferase) domain 1 406 618 - -
Lcy10g1527 649 Gene3D Phosphorylase Kinase; domain 1 301 405 - -
Lcy10g1527 649 Pfam Leucine rich repeat N-terminal domain 60 98 IPR013210 -
Lcy10g1527 649 FunFam Putative LRR receptor-like serine/threonine-protein kinase 59 240 - -
Lcy10g1527 649 MobiDBLite consensus disorder prediction 609 631 - -
Lcy10g1527 649 ProSiteProfiles Protein kinase domain profile. 329 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1527 649 SMART serkin_6 329 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1527 649 Pfam Protein tyrosine and serine/threonine kinase 332 598 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1527 649 Gene3D Ribonuclease Inhibitor 59 240 IPR032675 -
Lcy10g1527 649 FunFam Somatic embryogenesis receptor-like kinase 1 406 618 - -
Lcy10g1527 649 MobiDBLite consensus disorder prediction 617 631 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1527 Lcy-Chr10:39732833 Lcy7g0388 Lcy-Chr7:3288478 1.67E-288 dispersed
Lcy10g1527 Lcy-Chr10:39732833 Lcy13g1261 Lcy-Chr13:29715591 6.43E-217 wgd
Lcy10g1527 Lcy-Chr10:39732833 Lcy8g0059 Lcy-Chr8:1537500 1.49E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65396 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1527 - - - 0.0