Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g1539 | ATGAATGGGAAGGATGATTTTGAAGTTGAGAGTAGGACCAGTGATCCTATGAGTATCTCCTCCGGCTGGCAATTTGCTGCTGCTAATCTCACTAATGAGTCTGGGGGATTCGTTTCGACCGGGAATCCTTCAGTTGTTAGCAATGGGGGTCTAGGTGTTTCTTCTTGTCCTTCAACTTCAATATCTAACTTATTTACTTCAACCCTTTTGAACCATCATACCGACTCGCAAAACTCGGGATTCTGCAGCACCTTTAATGAACAAAACAGCATAGTTGCTTCTGATACAACTGTAGTTGATGGAGAGGGTCTGAATTCTTTGAGATCTAGTAGTGATAGAATGCTGGGTATGGATTGGAACCAACAAAATCCATGGATGAAAGGAGTTTTCTCAGCAAATGTTCCTGGAATGTTTCCAGCTAATTTGTCTCAACTACCAGCCGATTCGGCATTCATAGAGCGTGCAGCACGGTTTTCCTGCTTCAATAGTGGAGTTTTTGGGGCTCCGCCTGCCAGTCCATTTGGTATTTCAGACTCTATAGGCGTTCATTCTAGGGGTGCATTTGGAAGGCAAGAAGTTATTTCCAGAAATGGAGCCTCCAAAGATGTTTCTTTGCCCATGGAGCATGAGGCTAATGAAAAGGGTCCACCAAAGAATGAGAAAGAAAGTGAGATGTCTCAAGACAGGGCTAAACAAGGTTGTGTTGGTGAGTCTGGTAATGAATCTGATGAAGCTGGGTTTAGTGGTGGTCAAGACGAGCGATGCACATTGGGGGGTACTATCGCAGAACCATCAACAGAAGGACTGTGCTTAAAGAAAAGGAAAAGGGGTGATCAGAATATGGGACTTGGTCAAGTTAAAGAAGCTCCGCAACAAATTAACGAAACTGCAAAGAATGGGGCATCAAATCAGCAGAAGGGAGACCAAAACCCAAGTTCTACTACTAACAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCTCAAGCATCAGATGCTCCCAAAGAAGACTATATCCATGTTAGAGCTCGAAGAGGCCAGGCAACCAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAAAAGATAAGCGAAAGAATGAGACTCCTTCAGGACCTTGTGCCTGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTTGATGAAATCATTAACTATGTACAGTCACTGCAACGGCAAGTCGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTGGACTTTAACATCGAAGAGCTCCTCACAAAAGAAATCATTCAATCAAAGGCTGGTCCATCATTATTTGGTTTTCCTCCTGATCTGCCTATGCCGTACCTCCCGCAACATCCGTCTCACCATGGACTTATTCCGCCTTGTCTTCCTAACATGGGGAGCTCCCCGGACCTTCTACGAAGAACAATCAATTCCCAGCTGACATCACTTGTTAGTGGATTCAAGGAGCCTGTTCAGCTACCGAACGTGTGGGAGAATGATCTCCACAATGTTGTCCCGATGAACTTTGACGTCACTGCACCCTCCAATGGTCAAGATGTTGATGGTACTATTTGCTCAAGTTCTACTCCACAATGCAACACCAGAGCAGAACTCTAA | 1614 | 44.8 | MNGKDDFEVESRTSDPMSISSGWQFAAANLTNESGGFVSTGNPSVVSNGGLGVSSCPSTSISNLFTSTLLNHHTDSQNSGFCSTFNEQNSIVASDTTVVDGEGLNSLRSSSDRMLGMDWNQQNPWMKGVFSANVPGMFPANLSQLPADSAFIERAARFSCFNSGVFGAPPASPFGISDSIGVHSRGAFGRQEVISRNGASKDVSLPMEHEANEKGPPKNEKESEMSQDRAKQGCVGESGNESDEAGFSGGQDERCTLGGTIAEPSTEGLCLKKRKRGDQNMGLGQVKEAPQQINETAKNGASNQQKGDQNPSSTTNKPAGKQGKQDSQASDAPKEDYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEIIQSKAGPSLFGFPPDLPMPYLPQHPSHHGLIPPCLPNMGSSPDLLRRTINSQLTSLVSGFKEPVQLPNVWENDLHNVVPMNFDVTAPSNGQDVDGTICSSSTPQCNTRAEL | 537 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 39809189 | 39811897 | + | Maker00006868 | Lcy10g1539 | 645050 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g1539 | 537 | MobiDBLite | consensus disorder prediction | 297 | 327 | - | - | |
Lcy10g1539 | 537 | MobiDBLite | consensus disorder prediction | 297 | 333 | - | - | |
Lcy10g1539 | 537 | SMART | finulus | 352 | 402 | IPR011598 | GO:0046983(InterPro) | |
Lcy10g1539 | 537 | FunFam | Basic helix-loop-helix transcription factor | 343 | 415 | - | - | |
Lcy10g1539 | 537 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 344 | 415 | IPR036638 | GO:0046983(InterPro) | |
Lcy10g1539 | 537 | MobiDBLite | consensus disorder prediction | 191 | 262 | - | - | |
Lcy10g1539 | 537 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 346 | 396 | IPR011598 | GO:0046983(InterPro) | |
Lcy10g1539 | 537 | CDD | bHLH_AtBPE_like | 336 | 421 | - | - | |
Lcy10g1539 | 537 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 143 | 452 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Lcy10g1539 | 537 | MobiDBLite | consensus disorder prediction | 206 | 228 | - | - | |
Lcy10g1539 | 537 | Gene3D | - | 343 | 417 | IPR036638 | GO:0046983(InterPro) | |
Lcy10g1539 | 537 | Pfam | Helix-loop-helix DNA-binding domain | 349 | 397 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1539 | Lcy-Chr10:39809189 | Lcy7g0378 | Lcy-Chr7:3190844 | 5.18E-135 | dispersed | |
Lcy10g1539 | Lcy-Chr10:39809189 | Lcy3g1006 | Lcy-Chr3:33992068 | 8.80E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19004 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g1539 | - | - | - | 0.0 |