Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1539 ATGAATGGGAAGGATGATTTTGAAGTTGAGAGTAGGACCAGTGATCCTATGAGTATCTCCTCCGGCTGGCAATTTGCTGCTGCTAATCTCACTAATGAGTCTGGGGGATTCGTTTCGACCGGGAATCCTTCAGTTGTTAGCAATGGGGGTCTAGGTGTTTCTTCTTGTCCTTCAACTTCAATATCTAACTTATTTACTTCAACCCTTTTGAACCATCATACCGACTCGCAAAACTCGGGATTCTGCAGCACCTTTAATGAACAAAACAGCATAGTTGCTTCTGATACAACTGTAGTTGATGGAGAGGGTCTGAATTCTTTGAGATCTAGTAGTGATAGAATGCTGGGTATGGATTGGAACCAACAAAATCCATGGATGAAAGGAGTTTTCTCAGCAAATGTTCCTGGAATGTTTCCAGCTAATTTGTCTCAACTACCAGCCGATTCGGCATTCATAGAGCGTGCAGCACGGTTTTCCTGCTTCAATAGTGGAGTTTTTGGGGCTCCGCCTGCCAGTCCATTTGGTATTTCAGACTCTATAGGCGTTCATTCTAGGGGTGCATTTGGAAGGCAAGAAGTTATTTCCAGAAATGGAGCCTCCAAAGATGTTTCTTTGCCCATGGAGCATGAGGCTAATGAAAAGGGTCCACCAAAGAATGAGAAAGAAAGTGAGATGTCTCAAGACAGGGCTAAACAAGGTTGTGTTGGTGAGTCTGGTAATGAATCTGATGAAGCTGGGTTTAGTGGTGGTCAAGACGAGCGATGCACATTGGGGGGTACTATCGCAGAACCATCAACAGAAGGACTGTGCTTAAAGAAAAGGAAAAGGGGTGATCAGAATATGGGACTTGGTCAAGTTAAAGAAGCTCCGCAACAAATTAACGAAACTGCAAAGAATGGGGCATCAAATCAGCAGAAGGGAGACCAAAACCCAAGTTCTACTACTAACAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCTCAAGCATCAGATGCTCCCAAAGAAGACTATATCCATGTTAGAGCTCGAAGAGGCCAGGCAACCAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAAAAGATAAGCGAAAGAATGAGACTCCTTCAGGACCTTGTGCCTGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTTGATGAAATCATTAACTATGTACAGTCACTGCAACGGCAAGTCGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTGGACTTTAACATCGAAGAGCTCCTCACAAAAGAAATCATTCAATCAAAGGCTGGTCCATCATTATTTGGTTTTCCTCCTGATCTGCCTATGCCGTACCTCCCGCAACATCCGTCTCACCATGGACTTATTCCGCCTTGTCTTCCTAACATGGGGAGCTCCCCGGACCTTCTACGAAGAACAATCAATTCCCAGCTGACATCACTTGTTAGTGGATTCAAGGAGCCTGTTCAGCTACCGAACGTGTGGGAGAATGATCTCCACAATGTTGTCCCGATGAACTTTGACGTCACTGCACCCTCCAATGGTCAAGATGTTGATGGTACTATTTGCTCAAGTTCTACTCCACAATGCAACACCAGAGCAGAACTCTAA 1614 44.8 MNGKDDFEVESRTSDPMSISSGWQFAAANLTNESGGFVSTGNPSVVSNGGLGVSSCPSTSISNLFTSTLLNHHTDSQNSGFCSTFNEQNSIVASDTTVVDGEGLNSLRSSSDRMLGMDWNQQNPWMKGVFSANVPGMFPANLSQLPADSAFIERAARFSCFNSGVFGAPPASPFGISDSIGVHSRGAFGRQEVISRNGASKDVSLPMEHEANEKGPPKNEKESEMSQDRAKQGCVGESGNESDEAGFSGGQDERCTLGGTIAEPSTEGLCLKKRKRGDQNMGLGQVKEAPQQINETAKNGASNQQKGDQNPSSTTNKPAGKQGKQDSQASDAPKEDYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEIIQSKAGPSLFGFPPDLPMPYLPQHPSHHGLIPPCLPNMGSSPDLLRRTINSQLTSLVSGFKEPVQLPNVWENDLHNVVPMNFDVTAPSNGQDVDGTICSSSTPQCNTRAEL 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39809189 39811897 + Maker00006868 Lcy10g1539 645050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1539 537 MobiDBLite consensus disorder prediction 297 327 - -
Lcy10g1539 537 MobiDBLite consensus disorder prediction 297 333 - -
Lcy10g1539 537 SMART finulus 352 402 IPR011598 GO:0046983(InterPro)
Lcy10g1539 537 FunFam Basic helix-loop-helix transcription factor 343 415 - -
Lcy10g1539 537 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 415 IPR036638 GO:0046983(InterPro)
Lcy10g1539 537 MobiDBLite consensus disorder prediction 191 262 - -
Lcy10g1539 537 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 396 IPR011598 GO:0046983(InterPro)
Lcy10g1539 537 CDD bHLH_AtBPE_like 336 421 - -
Lcy10g1539 537 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 143 452 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy10g1539 537 MobiDBLite consensus disorder prediction 206 228 - -
Lcy10g1539 537 Gene3D - 343 417 IPR036638 GO:0046983(InterPro)
Lcy10g1539 537 Pfam Helix-loop-helix DNA-binding domain 349 397 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1539 Lcy-Chr10:39809189 Lcy7g0378 Lcy-Chr7:3190844 5.18E-135 dispersed
Lcy10g1539 Lcy-Chr10:39809189 Lcy3g1006 Lcy-Chr3:33992068 8.80E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19004 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1539 - - - 0.0