Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1566 ATGGCCGTCACTGCCTCTCCCGACTGGTCACTGCCTTCAGTAAGCTCTTTCAGAAAACCCCATCTCATTTCTTTCATCCCCGCCTCTAATCTCGCTCTCCTTTTCTCTCTTCCCACTTCAAATCTTCGATCTCTTCAGCTAAATTCCTCCAGCTGCCCTTCCCCGATCCTAGATCAAGCACCCATCGCCCTTCCCGAGATCCATTTGGACTCTAATCTTCAAGACTTTGAGCTCCCTCCCTTGCCCAACATCGAGGATTTGAACGATTTCTTATGTGGGTTGTCGCAAAACCCTGCAAGCGAGGATTTGATCTACGAGTACTATGTGAAAGCGAAGGAGAGGGCGGGGTTTAGACCTGACAAATCGACATTGAGGCATCTAATCAGGTACTTGGTGCGATCAAAGAAATGGGATTTGATTTTGTTAGTTTCTAGAGATTTTGAGGATTATGGTGTTTGCCCTGATAGAGATACTTGTTCTAGATTGGTTAGTAGTTGTGTTAGAAGTAGGAAATTTAAAGTTGTTAAGGCTCTGCTCGAGGTTTTTGAAAGGGATTGTGATGTTGCTGCGGCTGCATTTGAAGCTGCCATGAGAGGCTACAATAAGCTTCATATGTACAAAAGCACTATTCTGGTTTTCCAGCGGTTGAAATCGGCGAAAATTGAAGCAGATTCTGGATGTTATTGCAGGGTCATGGAAGCTTACCTTAAGCTTGGAGATTCTGAGAGAGTTATGGAACTGTTTGATGAAGTTGAGAGTAGGATTTTGGATTTTACCCCCTTTTCGACCAAGATTTATGGGATTCTTTGCGAGTCATTAGCGAAATCAGGGCGCGTTTTCGAGTCGCTTGAGTTCTTTAGAGACATGAGGAAGAAAGGGATTGAAGAAGATTACACCATTTACTCTTCTTTGATATGCACTTTTGCAAGCATTCAGGAAGTTAAATTAGCAGAGGATCTTTACAATGAGGCAAAAGCCAAGAAGTTGTTGAGAGACCCTGCAATGTTTCTAAAGCTCATATTGATGTATATTCAACAAGGGTCATTAGAGAAGGCACTTGAGATTGTAGAAGTGATGAAGGACTTTAAAATTGGAGTGTCTGACTGCATTTTCTGTGCAATTGTCAACGGCTACGCCACAAGAAGGGGCTATAATTCTGCAGTTAATGTTTACGAGAAACTGATCGAAGACGGGTGTGAGCCGGGACAAGTGACATACGCCTCGGCGATCAACGCCTACTGCCGTGTCGGGCTGCACTCGAAAGCAGAGGACATATTTGGAGAAATGGAGGAGAAGGGGTTTGACAAATGTGTGGTTGCTTACTCTAGTTTGATATCAATGTATGGGAAGACAGGGAGATTAAAAGATGCAATGAGGCTGTTGGCAAAGATGAAAGAAAAAGGGTGTCAGCCAAATGTTTGGATTTACAACATTTTGATGGAGATGCATGGGAAGGCTAAGAATTTGAAGCAAGTTGAGAAGCTATGGAAGGAAATGAAGCGCAAAAAGATAGCTCCTGATAAGGTTAGCTATACAAGTATCATAAATGCTTATGTCAAGGCAGGAGAATTTGAGACGTGCGAGCAATATTACCGTGAGTTTCGGATGAATGGCGGCGCCATCGATAAGGCAATGGCGGGAATCATGGTCGGTGTGTTCTCGAAGACGAGTCGGGTTGATGAGCTGGTGAAGCTTCTGAGGGACATGAACTCAGAAGGAACACGCTTGGATGGGAGGCTGTATAGGTCAGCCTTGAATGCTTTGATGGATGCTGGGTTGCAAGTGCAGGCAAAATGGTTGCAAGATCATTATGCTGGAAAATCAGGCTTTGTTTAA 1836 43.95 MAVTASPDWSLPSVSSFRKPHLISFIPASNLALLFSLPTSNLRSLQLNSSSCPSPILDQAPIALPEIHLDSNLQDFELPPLPNIEDLNDFLCGLSQNPASEDLIYEYYVKAKERAGFRPDKSTLRHLIRYLVRSKKWDLILLVSRDFEDYGVCPDRDTCSRLVSSCVRSRKFKVVKALLEVFERDCDVAAAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSERVMELFDEVESRILDFTPFSTKIYGILCESLAKSGRVFESLEFFRDMRKKGIEEDYTIYSSLICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYIQQGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYNSAVNVYEKLIEDGCEPGQVTYASAINAYCRVGLHSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIINAYVKAGEFETCEQYYREFRMNGGAIDKAMAGIMVGVFSKTSRVDELVKLLRDMNSEGTRLDGRLYRSALNALMDAGLQVQAKWLQDHYAGKSGFV 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39999325 40001160 + Maker00006907 Lcy10g1566 645077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1566 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Lcy10g1566 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Lcy10g1566 611 SUPERFAMILY TPR-like 381 534 IPR011990 GO:0005515(InterPro)
Lcy10g1566 611 Pfam PPR repeat 271 294 IPR002885 -
Lcy10g1566 611 Pfam PPR repeat 228 253 IPR002885 -
Lcy10g1566 611 Pfam PPR repeat 509 538 IPR002885 -
Lcy10g1566 611 Gene3D Tetratricopeptide repeat domain 503 603 IPR011990 GO:0005515(InterPro)
Lcy10g1566 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Lcy10g1566 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Lcy10g1566 611 Gene3D Tetratricopeptide repeat domain 184 330 IPR011990 GO:0005515(InterPro)
Lcy10g1566 611 NCBIfam pentatricopeptide repeat 404 434 IPR002885 -
Lcy10g1566 611 NCBIfam pentatricopeptide repeat 509 538 IPR002885 -
Lcy10g1566 611 NCBIfam pentatricopeptide repeat 439 473 IPR002885 -
Lcy10g1566 611 NCBIfam pentatricopeptide repeat 475 507 IPR002885 -
Lcy10g1566 611 Pfam Pentatricopeptide repeat domain 362 413 IPR002885 -
Lcy10g1566 611 Pfam Pentatricopeptide repeat domain 425 485 IPR002885 -
Lcy10g1566 611 Gene3D Tetratricopeptide repeat domain 334 502 IPR011990 GO:0005515(InterPro)
Lcy10g1566 611 PANTHER ATPASE EXPRESSION PROTEIN 3 266 597 - -
Lcy10g1566 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Lcy10g1566 611 Gene3D Tetratricopeptide repeat domain 81 183 IPR011990 GO:0005515(InterPro)
Lcy10g1566 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1566 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0676 . . . . . . . . . . . . . . . . . Cmo15g00902 . Cma15g00867 . Car15g00816 . . Bhi12g01005 . . . . . Lcy10g1566 Cla01g00682 Cam01g0715 Cec01g0706 Cco01g0736 Clacu01g0701 Cmu01g0673 Cre09g1832 Lsi09g00740 Csa05g01316 . Cme09g01257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013247 0 3 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 27