Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1569 ATGACATACGGGTATCTACTCTTATTTGAGGGGAGGCTCGATGGTACTTTGTTCGAGGGGAAGATTGTTGGGACTGCGACCAAAGTTCCACATTGGCTAAATAAGGAGAAAGATTATGGGGATGGAGTTGATTTGGGACTGGGATTCAGTCGAGTCACCTCTCCAAATACACGGTCGCGAAATTTTGAAGCTCACTCCATTTTTTCCGGTTCCAGTCACCATGACGCTGCAGCTTCATCTCATTTTCTGAGTCGCCATTGCTCAAAGCCAACCGGTGTAATAACAATGGTGCCACCCGTAATGGAGCTTCCCGTAATCAATGGCTTTCACCCATTGCTCCGTTCCTCCTTATGCCCATGCCCTTGTTCTTCAATTCGTAGTCTCTTCTTTCACCGCAGGAAGATGTTTCTCAGGTTGTCTGGCTATCAGAATTCTTACCCATCACTGTGTACTACAGCGAATGGTTCTTTATCAAATGCTACCGGAAGGGTCAATAACGAGAAGGATTTCTGGGATGATTATGAGTTCGTGGAGGTGATTGGCATTGGCAGTAGAAAGGAAGCCGTGCTTGATTTTTGTCTCGAGTCATCCCTCGCGATTTCATCTCTGCGATTTTGGCAAATTGTGAAGCACGATTCTCTCAAAGTGCAACTACTTCAGAGATTCGTTGAAAAAGATTATACCCCAAGGATGATCGACTTTCCACTGTCACTACAATCATGTTCGAAGGCTGTTATACTTGTGGTTAGTGCTGGATATGGCTTGGATTACTCCGCAGCTGTTGATATTCTTAGAACCATAAGATCTGCAAATGGATTTACCGTTACAATTGTCTTAAAGCCTTTTAGCTTTGAAGGGAAAAGGCGCCAGGATGAGGTTAAACATTTGGTGGGAAGGCTAAAGGATCATACGAGCTTCTTAATTGATATTGACACCAATAGACTACTTGAAAAGGACTTGGTGACTCTTGACGAGGCTGTGAGATCTGCTAATAATGCTGTCTTGTTGGCTATAAATTCAGTATCCATTATAAAGTCTGAGATGTTAAGGAAGTTCATAGATGAACCTCAGAATGATGTGAAAGAGCTTGGTGTAGTCGAAGTCATTGAAATTCGGCACTCCTCTCCTTGTAGTTGCACAGTCAGAAAGGAAAATTTTGATTGTGGAATCTGGAAAGAGCCAAGACGTCTAGATGGCATTCTTCTTGGTGAAAGAGGGGGTAGCTCATCTTCTCTCCATCGCATGGTATACCATCTTGAGAATGGGCAGAGAAGTGGTGTAAGTTTAAATACCGAAAGGAGATTAAAAGGATTCTACCTTGTTTACAAAGATGATAACATTTCCAATACGCTGCTTTTGATTTCATCCCCAATACTTCAACCAAATGTAACTGGTGGGTCAAAGCTCATGGAGAGTGGGATGCTTCCACATCTAAATTGGGTTGAACCGTGTCAAGCCCCAAGCAATATTCAGATTTTGGAAAACCTTAAAGAAGGAAAGATCGGATTTGGAGGGGGTCAAAACTTCCGAACTTCAATCTTAAAGTCAATTTATGACTGCCCTTTCCTCAGTGTGCATTTAAAGGATTTGAAAGGCGTGGTTTTATGCATCGTGGCAAGCTCGGGTATTCTTGATGATAACGATAAAAGTACCTTGTTGAAAACTTTCCGTGAAGTTACTGCATATACAGGAAAAGTTATATTATCTGTAATTCAAGATCTAAATTTGGAGCCCAACTTTCTCATGACAACCGTCCTTATTGTAGGTTCGACAGAGCAGCAGTCTTCCAAAAGTAGTAGCATTTTATCTAGATTGGCCCAGCGTTTCCCTTTGGTTTTTAAGCTTTTATGGAAACCTCAAGAACCGTTGGAGGAAGCTGAAGAAAGTGATATGCTTGAAGATGCAAATCCTTCCAATTTAAGAGAGTCATCAGACCCTGATGTGGTCATAACTAAAATTGCTTCAGAGGGTGTGGATGAAGATTTTTACCATGGCACAGAACCTGAAAATCTCCAGACAACATTCAACTGCAGTGATTTATACAGCTCAAGTGATTTTGAACAACCTGAGGCTGGACTGTTAGAAACTGATGTGAATTCTTTGCCTTTTAGCAATGCAATTAGTAGAGGAGCTTCTTTTCGCAGAGACCCTCTCTATAGATGGAATTTGGGTCCAGGACATCAGATCGCACAGCAGTGGGCCAGAGAAAGAGCTGCTGATGCTGAATTGGCTTCTGCACTTGACAATATAAGCATATTTGACCTCCCAGTGGGGGTGAGACCTTCAGAAGAGCTAAAAGATAAAGCCACTCCAAATCTGGAGATGAAACATGAGAAGAAATCTAAAGCTTCAATTACTACCAGATTTTCTTCTCGGAATTCATTGACTGATGCAAGTTTGGAAGTGATTAAGGAATTTTACGATACCTCATCGATATTTTTGAAAGGGAAATCTGCCGACATTCCTAAGAAGCAAGGACTTTTATCTGTTCGTGCAGCATCAATGCTGGAAGCCGAGCGAGATTCACCTAAAAAGTGGAGTCCTGTGATGGAATTGCAATACAGAGGTGGCATTTACAGGGGACGCTGCCAAGGAGGCCTTCCCGAAGGAAAGGGCCGTCTAGTTCTTCAAGATGGGAGCATATATGATGGTATGTGGCGCTATGGTATGAGATCAGGTCAAGGTACAGTCTACTTCAACAATGGAGATATGTTTCAGGGATCATGGAGGGATGATGTTATGCATGGAAAGGTTTGGGATCGGTGGTTTGCAAACTTCTGGAAGGGAAAGGCTTATGGAGAAGGTCGCTTTTACTCAAAGTCAGGAGACGTTATATTTGGTCATTTCCAAGATGGATGGCGTCATGGTGACTTTCTTTGCATTAATGTTGATGGTTCAAGATATATAGAAGTTTGGAATGAAGGTTATCTTATGGGACGTGAGAAGTTGGACTCTGGTTCTGATCCTGCATGA 2973 42.38 MTYGYLLLFEGRLDGTLFEGKIVGTATKVPHWLNKEKDYGDGVDLGLGFSRVTSPNTRSRNFEAHSIFSGSSHHDAAASSHFLSRHCSKPTGVITMVPPVMELPVINGFHPLLRSSLCPCPCSSIRSLFFHRRKMFLRLSGYQNSYPSLCTTANGSLSNATGRVNNEKDFWDDYEFVEVIGIGSRKEAVLDFCLESSLAISSLRFWQIVKHDSLKVQLLQRFVEKDYTPRMIDFPLSLQSCSKAVILVVSAGYGLDYSAAVDILRTIRSANGFTVTIVLKPFSFEGKRRQDEVKHLVGRLKDHTSFLIDIDTNRLLEKDLVTLDEAVRSANNAVLLAINSVSIIKSEMLRKFIDEPQNDVKELGVVEVIEIRHSSPCSCTVRKENFDCGIWKEPRRLDGILLGERGGSSSSLHRMVYHLENGQRSGVSLNTERRLKGFYLVYKDDNISNTLLLISSPILQPNVTGGSKLMESGMLPHLNWVEPCQAPSNIQILENLKEGKIGFGGGQNFRTSILKSIYDCPFLSVHLKDLKGVVLCIVASSGILDDNDKSTLLKTFREVTAYTGKVILSVIQDLNLEPNFLMTTVLIVGSTEQQSSKSSSILSRLAQRFPLVFKLLWKPQEPLEEAEESDMLEDANPSNLRESSDPDVVITKIASEGVDEDFYHGTEPENLQTTFNCSDLYSSSDFEQPEAGLLETDVNSLPFSNAISRGASFRRDPLYRWNLGPGHQIAQQWARERAADAELASALDNISIFDLPVGVRPSEELKDKATPNLEMKHEKKSKASITTRFSSRNSLTDASLEVIKEFYDTSSIFLKGKSADIPKKQGLLSVRAASMLEAERDSPKKWSPVMELQYRGGIYRGRCQGGLPEGKGRLVLQDGSIYDGMWRYGMRSGQGTVYFNNGDMFQGSWRDDVMHGKVWDRWFANFWKGKAYGEGRFYSKSGDVIFGHFQDGWRHGDFLCINVDGSRYIEVWNEGYLMGREKLDSGSDPA 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40019129 40040963 + Maker00007006 Lcy10g1569 645080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1569 990 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 491 977 - GO:0005829(PANTHER)|GO:0009707(PANTHER)|GO:0010020(PANTHER)|GO:0035452(PANTHER)
Lcy10g1569 990 SUPERFAMILY Tubulin nucleotide-binding domain-like 179 342 IPR036525 -
Lcy10g1569 990 Gene3D - 861 921 - -
Lcy10g1569 990 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 856 975 - -
Lcy10g1569 990 SMART morn 857 878 IPR003409 -
Lcy10g1569 990 SMART morn 880 901 IPR003409 -
Lcy10g1569 990 SMART morn 903 925 IPR003409 -
Lcy10g1569 990 Coils Coil 313 333 - -
Lcy10g1569 990 Gene3D Tubulin/FtsZ, GTPase domain 217 362 IPR036525 -
Lcy10g1569 990 MobiDBLite consensus disorder prediction 625 644 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1569 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1569 Lcy-Chr10:40019129 Lcy1g0952 Lcy-Chr1:8343072 9.54E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1110 . . Bda01g01766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01940 . . . . Cmo15g00905 . Cma15g00870 . Car15g00817 . . Bhi12g01003 . . . . . Lcy10g1569 Cla01g00679 Cam01g0711 Cec01g0703 Cco01g0732 Clacu01g0697 Cmu01g0672 Cre09g1833 Lsi09g00736 Csa05g01314 Chy09g00454 Cme09g01260
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009880 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 1 1 1 1 32