Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1573 ATGGTTCTATCGAAAACGTTCTCAGAATCGGATGTGTCGATACATTCGACATTCGCGTCTCGGTACGTGCGGGACTCTGCTCCAAGGTTCAGCATGCCCGAAAACTCCATGCCGAAGGAGGCCGCCTTTCAGATCATCAACGACGAGCTCATGCTCGACGGCAACCCACGCCTCAATTTGGCTTCCTTCGTCACCACTTGGATGGAGCCCGAATGCGACAAGCTCATCATGGACTCCGTCAACAAGAACTACGTCGACATGGACGAGTACCCTGTCACCACCGAGCTCCAGAACCGCTGCGTCAACATGATTGCCCACCTCTTCAACGCTCCCTTGGGAGACTCCGACGCCGCCGTCGGAGTCGGCACGGTCGGCTCGTCGGAGGCCATCATGCTGGCCGGGCTGGCCTTCAAGAGGAAGTGGCAGAACAAGCGCAAGGCAGAGGGGAAGCCTTACGACAGGCCCAACATCGTGACCGGCGCCAACGTGCAGGTGTGTTGGGAGAAATTTGCGAGATACTTCGAGGTGGAGCTCAAGGAAGTGAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGAAAAGGCGGTTGAGATGGTGGATGAGAACACCATCTGCGTTGCCGCCATTTTGGGCTCCACTTACAACGGCGAATTTGAAGACGTGAAGCTGCTCAACCATCTGCTGCTGGAGAAGAACAAGGAAACGGGATGGGACACGCCCATTCACGTGGATGCAGCGAGTGGTGGGTTCATAGCGCCGTTTCTGTATCCAGAGCTCGAGTGGGACTTCAGGCTTCCATTGGTGAAGAGCATCAACGTCAGTGGCCACAAGTACGGCCTCGTCTACGCTGGAATCGGTTGGGTCATTTGGAGAACCAAAGAGGATTTGCCGGAAGAACTCATTTTCCACATCAATTACCTCGGAGCCGATCAGCCCACCTTCACTCTCAACTTCTCCAAAGGCTCCAGCCAGATCATTGCTCAGTATTACCAACTAATCCGCCTGGGTTTTGAGGGATACCGCAATGTGATGCAGAATTGCCACGACAACGCAATGGTGTTGAAGGAAGGACTTGAAAGCACAGGGCGGTTCAGCATAGCGTCAAAGGACATGGGAGTGCCGGTGGTGGCGTTCTCTCTGAAAGACAGAAGCCGCCACGACGAGTTTGAGGTGTCAGAAATGCTGCGACGGTTCGGATGGATCGTGCCGGCATATCCAATGCCAGAGGGGGCGAAGCACGTGTCGGTTCTTCGTGTGGTGATCAGAGAAGACTTCTCGAGAACCCTTGCAGAGCGGCTGGTGCTTGATATCACAAAGGTTCTGGCAGAGCTGGATACTCTTCCACCAAAGAAGAGTGGGAAAAGTGAGACGGCAGTGAAGAAGACGGCAGAGGAAACAGAGAGGGAAATAGCGAGTTATTGGAGTAATATAACGAAAGCTAGGAAAATCAAGATTGCTGCAAACCAGGGTGGTCCTTCAGTTACGGTGGTTGCCAAATAA 1500 53.67 MVLSKTFSESDVSIHSTFASRYVRDSAPRFSMPENSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDRPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPEKAVEMVDENTICVAAILGSTYNGEFEDVKLLNHLLLEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYRNVMQNCHDNAMVLKEGLESTGRFSIASKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDITKVLAELDTLPPKKSGKSETAVKKTAEETEREIASYWSNITKARKIKIAANQGGPSVTVVAK 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40084878 40086865 + Maker00006873 Lcy10g1573 645084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1573 499 FunFam Glutamate decarboxylase 66 360 - -
Lcy10g1573 499 CDD DOPA_deC_like 59 439 - -
Lcy10g1573 499 PANTHER GLUTAMATE DECARBOXYLASE 1 482 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Lcy10g1573 499 FunFam Glutamate decarboxylase 361 448 - -
Lcy10g1573 499 Gene3D - 66 360 IPR015421 -
Lcy10g1573 499 Gene3D - 361 448 - -
Lcy10g1573 499 Gene3D - 1 65 - -
Lcy10g1573 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Lcy10g1573 499 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Lcy10g1573 499 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Lcy10g1573 499 FunFam Glutamate decarboxylase 1 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1110 Lcy-Chr10:33453453 Lcy10g1573 Lcy-Chr10:40084878 2.53E-303 dispersed
Lcy10g1573 Lcy-Chr10:40084878 Lcy5g2593 Lcy-Chr5:48579796 8.59E-276 dispersed
Lcy10g1572 Lcy-Chr10:40064805 Lcy10g1573 Lcy-Chr10:40084878 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1573 K01580 - csv:101208026 942.954