Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1583 ATGTTGAAAGCTTCTTCTTCTTCTGCAGCAGCAGCAGCTACAGCTTCTTCTTCTGGTGGCCCTCCTCCCAATTCTGACCATGGGGTCACCAGCAAAAGGAAAAGAAGGCCTGCAGGAACCCCAGATCCGGATGCGGAAGTGGTTTCCCTATCGCCAAAAACGCTTTTGGAATCGGATCGCTATGTTTGTGAGATATGCAACCAAGGGTTCCAGAGGGATCAGAATCTGCAGATGCACCGCCGCCGCCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGCGGAGACGGCGGAGGCGGTGAAGAAAAAGGTGTTTGTTTGCCCCGAGCCGACTTGTCTCCACCACGACCCTTGCCATGCCCTTGGCGACCTCGTCGGCATCAAGAAGCACTTCCGGAGAAAGCACAGCAACCAGAAGCACTGGGTTTGTGACAAGTGCTCCAAGGCTTACGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTCATAGAGCACCAAGACGCTTGCAATCTCCGGCTGATGAGATCCGATCAGTTACAGGCTGCGCCGCCGCTGCCGCAACCGCCATTACTGCACCCCTACTCACGATCGGTTTCTTACACCGACGCCTCCACCAGCAACGATCATGGCTTTCAAATGGCTACTCCACTACGAGGGTTTCCAATTTTATCATCAAATTCAGATCGAAACATCAACATTAATCTACCCGATCACCATGATCTCGAGCTCCATCTTTCTTCTCCAAGCTCGGCATTTCTGAAGCTCTCAATTGGGTCCAACAAGGAACCAAACGACGACCGCCAGCTCGAGCTGGCCATAGCCGAGAAGGCGTATGCAGACGAAGCGAGACGAGAGGCGAAACGACAGATCGAAATCGCCGAGGTCGAGTTTGCAAACGCCAAGATGATACGGCAGCAGGCTCAGGCGGAATTGGAGAAGGCAAGGATCTTGAAGGAAGAGGCCAGCCGGAAAATGAGCTCCACCATCATGGAAATCACTTGCCAAACTTGCCGGTTGCACTTCCACACGAGCTCCGTCGCACCCGAGGAGACGTCGCTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGATGGAGAGTGA 1164 53.52 MLKASSSSAAAAATASSSGGPPPNSDHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLRLMRSDQLQAAPPLPQPPLLHPYSRSVSYTDASTSNDHGFQMATPLRGFPILSSNSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKEPNDDRQLELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCQTCRLHFHTSSVAPEETSLAISYMSSATTEGDGE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40193461 40195955 - Maker00039909 Lcy10g1583 645094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1583 387 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 100 134 - -
Lcy10g1583 387 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 341 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy10g1583 387 SUPERFAMILY beta-beta-alpha zinc fingers 60 160 IPR036236 -
Lcy10g1583 387 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 140 163 - -
Lcy10g1583 387 Coils Coil 302 343 - -
Lcy10g1583 387 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 167 189 - -
Lcy10g1583 387 Gene3D Classic Zinc Finger 125 200 - -
Lcy10g1583 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lcy10g1583 387 Gene3D Classic Zinc Finger 39 107 - -
Lcy10g1583 387 FunFam protein indeterminate-domain 12-like 40 110 - -
Lcy10g1583 387 MobiDBLite consensus disorder prediction 1 47 - -
Lcy10g1583 387 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lcy10g1583 387 SMART c2h2final6 104 134 IPR013087 -
Lcy10g1583 387 SMART c2h2final6 61 83 IPR013087 -
Lcy10g1583 387 SMART c2h2final6 140 167 IPR013087 -
Lcy10g1583 387 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1583 Lcy-Chr10:40193461 Lcy5g2358 Lcy-Chr5:46416795 3.66E-108 dispersed
Lcy10g1583 Lcy-Chr10:40193461 Lcy1g0725 Lcy-Chr1:6207818 1.02E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19005 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1583 K25871 - csv:101210468 669.077