Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g1583 | ATGTTGAAAGCTTCTTCTTCTTCTGCAGCAGCAGCAGCTACAGCTTCTTCTTCTGGTGGCCCTCCTCCCAATTCTGACCATGGGGTCACCAGCAAAAGGAAAAGAAGGCCTGCAGGAACCCCAGATCCGGATGCGGAAGTGGTTTCCCTATCGCCAAAAACGCTTTTGGAATCGGATCGCTATGTTTGTGAGATATGCAACCAAGGGTTCCAGAGGGATCAGAATCTGCAGATGCACCGCCGCCGCCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGCGGAGACGGCGGAGGCGGTGAAGAAAAAGGTGTTTGTTTGCCCCGAGCCGACTTGTCTCCACCACGACCCTTGCCATGCCCTTGGCGACCTCGTCGGCATCAAGAAGCACTTCCGGAGAAAGCACAGCAACCAGAAGCACTGGGTTTGTGACAAGTGCTCCAAGGCTTACGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTCATAGAGCACCAAGACGCTTGCAATCTCCGGCTGATGAGATCCGATCAGTTACAGGCTGCGCCGCCGCTGCCGCAACCGCCATTACTGCACCCCTACTCACGATCGGTTTCTTACACCGACGCCTCCACCAGCAACGATCATGGCTTTCAAATGGCTACTCCACTACGAGGGTTTCCAATTTTATCATCAAATTCAGATCGAAACATCAACATTAATCTACCCGATCACCATGATCTCGAGCTCCATCTTTCTTCTCCAAGCTCGGCATTTCTGAAGCTCTCAATTGGGTCCAACAAGGAACCAAACGACGACCGCCAGCTCGAGCTGGCCATAGCCGAGAAGGCGTATGCAGACGAAGCGAGACGAGAGGCGAAACGACAGATCGAAATCGCCGAGGTCGAGTTTGCAAACGCCAAGATGATACGGCAGCAGGCTCAGGCGGAATTGGAGAAGGCAAGGATCTTGAAGGAAGAGGCCAGCCGGAAAATGAGCTCCACCATCATGGAAATCACTTGCCAAACTTGCCGGTTGCACTTCCACACGAGCTCCGTCGCACCCGAGGAGACGTCGCTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGATGGAGAGTGA | 1164 | 53.52 | MLKASSSSAAAAATASSSGGPPPNSDHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLRLMRSDQLQAAPPLPQPPLLHPYSRSVSYTDASTSNDHGFQMATPLRGFPILSSNSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKEPNDDRQLELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCQTCRLHFHTSSVAPEETSLAISYMSSATTEGDGE | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 40193461 | 40195955 | - | Maker00039909 | Lcy10g1583 | 645094 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g1583 | 387 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 100 | 134 | - | - | |
Lcy10g1583 | 387 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 15 | 341 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lcy10g1583 | 387 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 160 | IPR036236 | - | |
Lcy10g1583 | 387 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 140 | 163 | - | - | |
Lcy10g1583 | 387 | Coils | Coil | 302 | 343 | - | - | |
Lcy10g1583 | 387 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 167 | 189 | - | - | |
Lcy10g1583 | 387 | Gene3D | Classic Zinc Finger | 125 | 200 | - | - | |
Lcy10g1583 | 387 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Lcy10g1583 | 387 | Gene3D | Classic Zinc Finger | 39 | 107 | - | - | |
Lcy10g1583 | 387 | FunFam | protein indeterminate-domain 12-like | 40 | 110 | - | - | |
Lcy10g1583 | 387 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Lcy10g1583 | 387 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Lcy10g1583 | 387 | SMART | c2h2final6 | 104 | 134 | IPR013087 | - | |
Lcy10g1583 | 387 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Lcy10g1583 | 387 | SMART | c2h2final6 | 140 | 167 | IPR013087 | - | |
Lcy10g1583 | 387 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1583 | Lcy-Chr10:40193461 | Lcy5g2358 | Lcy-Chr5:46416795 | 3.66E-108 | dispersed | |
Lcy10g1583 | Lcy-Chr10:40193461 | Lcy1g0725 | Lcy-Chr1:6207818 | 1.02E-69 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19005 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g1583 | K25871 | - | csv:101210468 | 669.077 |