Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1587 ATGGACGCCGCCGCTTCCAACCGCCGTCTAGGGGTTGTTCTGTGTGTTGTTATTGCGTTGAGCGGCGTCGTTTTGTGCGGTGCTGAGCTTCAGCGATTTGCCCATCCGCCCAAAGACGACGGCTCTCTCAGCCTTCTGGTCGTCGGAGACTGGGGTCGAAAAGGAGCTTACAACCAATCTCAAGTTGCTGTTCAGATGGGGATCATTGGAGAAAAATTGAAGGTCGATTTTATAATTTCAACCGGTGATAATTTTTACGACAGGGGATTGAAGGGCACCAACGATCCAGCATTTGAAGAGTCATTTTCCAAAATATACACTGCATCCAGCTTGCAAAAGGAGTGGTACAGTGTTTTGGGTAATCATGATTATAGAGGAGATGTTGAAGCCCAACTAAGTCCAATTTTGAGAAAATTGGATAATAGATGGATCTGTATGAGATCTTTCATTGTCGATACAGAAATTGTGGAGTTCTTCTTTGTGGACACAACTCCCTTTGTAGACAAGTATTTTATTGACCCTGAGGATGAGGTTTATGATTGGAAGGGTGTTATGCCAAGACAAAATTACCTTTCTAACCTTCTCAAGGAAATGGATTCAGCTCTAAAGGACTCAAATGCAAAATGGAAGATAGTTGTGGGACATCACACATTAAAAAGTGCTGGACAACATGGTGACACTCTCGAACTACTTCACCAACTTCTTCCCATTCTTGAGGAAAATAAAGTGGATTTCTATATCAATGGACACGACCATTGTTTGCAACACGTAAGCAGCATTAACAGCCCAGTTCAATTTTTCACAAGTGGGGGAGGATCAAAGGCATGGAGAGGTGACATAAATTGGATGGATCCAAAGGAGTTGAAGTTTTATTATGATGGGCAAGGTTTCATGTCCTTACAAATTACTCATTCACAAGCAAACTTCACTTTCTTTGACATCTTTGGCAATGTTTTACACCAATGGATCTCTTCCAACAACCCACTTTTTCACTCTGCCCTTTGA 1005 42.29 MDAAASNRRLGVVLCVVIALSGVVLCGAELQRFAHPPKDDGSLSLLVVGDWGRKGAYNQSQVAVQMGIIGEKLKVDFIISTGDNFYDRGLKGTNDPAFEESFSKIYTASSLQKEWYSVLGNHDYRGDVEAQLSPILRKLDNRWICMRSFIVDTEIVEFFFVDTTPFVDKYFIDPEDEVYDWKGVMPRQNYLSNLLKEMDSALKDSNAKWKIVVGHHTLKSAGQHGDTLELLHQLLPILEENKVDFYINGHDHCLQHVSSINSPVQFFTSGGGSKAWRGDINWMDPKELKFYYDGQGFMSLQITHSQANFTFFDIFGNVLHQWISSNNPLFHSAL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40269853 40274890 + Maker00039620 Lcy10g1587 645098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1587 334 SUPERFAMILY Metallo-dependent phosphatases 42 323 IPR029052 -
Lcy10g1587 334 FunFam Purple acid phosphatase 38 330 - -
Lcy10g1587 334 PIRSF Acid_Ptase_5 7 332 IPR024927 GO:0003993(InterPro)
Lcy10g1587 334 CDD MPP_ACP5 43 316 IPR024927 GO:0003993(InterPro)
Lcy10g1587 334 Gene3D - 38 329 IPR029052 -
Lcy10g1587 334 Pfam Calcineurin-like phosphoesterase 45 253 IPR004843 GO:0016787(InterPro)
Lcy10g1587 334 PANTHER TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 24 326 IPR051558 GO:0003993(PANTHER)|GO:0008198(PANTHER)|GO:0008199(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1587 K14379 - - csv:101221226 589.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1587 Lcy-Chr10:40269853 Lcy10g1589 Lcy-Chr10:40279311 1.22E-190 proximal
Lcy10g1587 Lcy-Chr10:40269853 Lcy10g1588 Lcy-Chr10:40275759 8.24E-35 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g545 . . . . Bpe13g00994 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01958 . . . . . . . . . . . . Cmo15g00921 . Cma15g00883 . Car15g00830 Cpe13g00432 . Bhi12g00974 . . . . . Lcy10g1587 Cla01g00660 Cam01g0690 Cec01g0682 Cco01g0710 Clacu01g0679 Cmu01g0653 Cre09g1853 Lsi09g00714 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004118 1 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 2 2 3 2 1 5 1 1 43