Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1592 ATGTTCGAGGGCAAGGATCTCGCCTCCGACGGCGAGAACTCTCAGAGCAAGCTCTTGCGCCATGTTTCTGAGCGTATGAGGGAGAATTCTGATGCGAAATCTGGATTTTCCGACAAGGGTATTGGATTTCGGGAAGAATCGGGGATGGGTTCTGATGGGTTGCATTCGAAATCTGCCAGAATCGGGATTTCGGGCTCTCAGGAACTCACTCTTAGCTACCTTTGTGAGAATTCGAAACTGGGTTCTCCCGAGAAGGAGAAGGGATTTGCGCCTTCCTTCGAGAAAGGTAGTTACAAAGGTAAGGAAGTTTTGTTTTCTGAGAATTGTAACGAGGATGACAAATGGGTTGAGAGGGATTTCTTGAATTTGAACTCGAATAGGGGAAATCAGTCGAAGAGGGAGGTTGAGGAGGAGACTGAAAGGGAGAATCGGGGAAAGAAGCCGAAGCTTGAAACGCTTAATCTTTCTTTAGCTTTGCCTGAAGTTTCACTCTCTCTCACTGCTTCAAATGCTTTGCAAAATGAAGATCCTCCCCCTGTTCGGTCCAAGCCATGTAGGAGCGTTCAATCTTTGGCACCATCTATGAATAATACCCAAACTACTTGTTCTAACGATTTCACTGCTGCTTCGCTTTCCTATTCCTACTCCCACCAATTTTCTCACAACCCCAGCTGCTCGTTGACGCGAAACTCGACTGAGAATTACGACTATTCGGTTGGGAGAGATGACCATATTTGGAACTGTGGAGAGGGAACTAATGGGTCTGTTCATAGCAGGTTCAAACCATTAGGGGATGGAGTTGCCTTGTCAAATCATGGAGGCGGACTTAATTCTTTGTTGCAGGGGAATCGCCCTTCGAATAAGGACGTATGTAATAACTCCGAAGAACACTCATTTTTCCCGTCTGAACTTCCCGCAAGACCGAGAATGGAGGTGAAGTCAGGGAATTCGATGGGAAGGGGATCGGAAAATTTTAAGGGGCTAGAGGGTATTACTAGGCCGGAGAGAATTCTTCGTGAAATTGTCTCGGAGTCGATCTCAGTCATGTCTCAGATAGTTCAGGAGCTTCCTGATGAAACACTTGCATCAATCAAAGATTATTTGAAAGATCTGATATCTATGCCTGAGAAGAGAGACGAACTATCGTCTCTCCAAAAGCGGCTCGAGCGAAGATCTGATCTCACTAAGGAAACTCTTTCAAAGTGTCACAAAGCGCAGCTAGAAATTCTAGTTTCAGTGAAGATGGGGCTTGCAAGTTTCATCTCTGCGAAAAGCAGGTGCTCCATTGGTGAGCTTGTGGATATTTTCTTGTTTCTGAAATGCAGGAACTGCAAGAATGTAATCCCAGTTGATGATTGTGACTGCAAAATCTGCTCAGCGAACAAGGGATTCTGCAGCTCATGTATGTGCCCCATCTGTTTGAACTTTGATTGTGCAAACAATACTTGTAGTTGGGTTGGTTGTGATGTCTGCTCCCATTGGTGCCATGCTGCCTGTGGGATTGAGAAGAATCTCATCCGACCCGGTCCTAGCCTCAATGGCCCGTTGGGGACAACGGAGATGCAGTTCCACTGCATTGCTTGCAATCATGCTTCGGAGATGTTTGGATTTGTCAAGGATGTTTTTGTGTATTGTGCAAAGAATTGGGGTCTAGAAACCTTGATGAAGGAGCTTGAGTGTGTGAAGAGGATCTTCATTGGAAGTGATGACTACAAAGGCAAGGATTTGTATATTAAAGCTGCTCGGATGCTGGCCAAGCTTGAAAGTAAAGCACTTGCTCCTTGGGAGGCCTGCAATAGGATTCTTGAATACTTCAATTATGGCACATCGGAGATTTCAACTTCAGGGGTATCCTCAGAGAAGTTAGGAACAACCGACACGACCAGCCTGTCGAAAGATGGGATGTCGCTTCCACAATCAGGGTCATTACCTTCAACATACGTCATGCAGAAAAACACCCCATCTAGGCCACATCATGACCTGATCTCCAGCGATCTTCGACGGAACGATCTCAAAGTCTCCATCGCCAGTGACTTGAATGCAGACGACGAGTTCCAATTCAGGACGTTGACAAAGAAAGAGGGCTTGGAAAGCTTGGAAAGCATTGTAAGAATCAAGAAAGCAGAGGCAGGGATGTTCCAAAACAAGGCAGACGAGGCACGGAGGGAGGCGGAACGACTAAGACAAATAATCATTGCAAAGACAGAGAAACTCGACGAGGAGTATGCGGAGAAGATCGGGAAGCTGTGCTTGAAGGAGGCGGAAGACAGGCGGAGGAAGAAGGTGGAGGAGCTGAAGGTATTGGAGAGCTCTCAAATAGATTATTACAACATGAAGATGAGAATGCAGAAGGAGATAGCAGGGTTGTTGGAGAGGATGGAAGTGACAAAAAAGCAAATAGTGTGA 2406 46.18 MFEGKDLASDGENSQSKLLRHVSERMRENSDAKSGFSDKGIGFREESGMGSDGLHSKSARIGISGSQELTLSYLCENSKLGSPEKEKGFAPSFEKGSYKGKEVLFSENCNEDDKWVERDFLNLNSNRGNQSKREVEEETERENRGKKPKLETLNLSLALPEVSLSLTASNALQNEDPPPVRSKPCRSVQSLAPSMNNTQTTCSNDFTAASLSYSYSHQFSHNPSCSLTRNSTENYDYSVGRDDHIWNCGEGTNGSVHSRFKPLGDGVALSNHGGGLNSLLQGNRPSNKDVCNNSEEHSFFPSELPARPRMEVKSGNSMGRGSENFKGLEGITRPERILREIVSESISVMSQIVQELPDETLASIKDYLKDLISMPEKRDELSSLQKRLERRSDLTKETLSKCHKAQLEILVSVKMGLASFISAKSRCSIGELVDIFLFLKCRNCKNVIPVDDCDCKICSANKGFCSSCMCPICLNFDCANNTCSWVGCDVCSHWCHAACGIEKNLIRPGPSLNGPLGTTEMQFHCIACNHASEMFGFVKDVFVYCAKNWGLETLMKELECVKRIFIGSDDYKGKDLYIKAARMLAKLESKALAPWEACNRILEYFNYGTSEISTSGVSSEKLGTTDTTSLSKDGMSLPQSGSLPSTYVMQKNTPSRPHHDLISSDLRRNDLKVSIASDLNADDEFQFRTLTKKEGLESLESIVRIKKAEAGMFQNKADEARREAERLRQIIIAKTEKLDEEYAEKIGKLCLKEAEDRRRKKVEELKVLESSQIDYYNMKMRMQKEIAGLLERMEVTKKQIV 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40322577 40326532 - Maker00039380 Lcy10g1592 645103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1592 801 MobiDBLite consensus disorder prediction 1 58 - -
Lcy10g1592 801 MobiDBLite consensus disorder prediction 613 636 - -
Lcy10g1592 801 Pfam Coiled-coil region of Oberon 665 790 IPR032535 -
Lcy10g1592 801 Pfam PHD - plant homeodomain finger protein 442 563 IPR032881 -
Lcy10g1592 801 MobiDBLite consensus disorder prediction 17 40 - -
Lcy10g1592 801 Coils Coil 710 737 - -
Lcy10g1592 801 Coils Coil 779 799 - -
Lcy10g1592 801 Coils Coil 751 771 - -
Lcy10g1592 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 549 568 IPR004082 -
Lcy10g1592 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 697 717 IPR004082 -
Lcy10g1592 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 391 406 IPR004082 -
Lcy10g1592 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 406 421 IPR004082 -
Lcy10g1592 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 432 453 IPR004082 -
Lcy10g1592 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 476 496 IPR004082 -
Lcy10g1592 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 736 758 IPR004082 -
Lcy10g1592 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 352 374 IPR004082 -
Lcy10g1592 801 MobiDBLite consensus disorder prediction 125 148 - -
Lcy10g1592 801 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 10 800 IPR004082 GO:0005634(PANTHER)|GO:0010071(PANTHER)|GO:0010078(PANTHER)|GO:0010468(PANTHER)|GO:0010492(PANTHER)
Lcy10g1592 801 MobiDBLite consensus disorder prediction 130 148 - -
Lcy10g1592 801 CDD PHD_OBE1_like 469 528 IPR047578 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1592 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1592 Lcy-Chr10:40322577 Lcy3g1895 Lcy-Chr3:46191235 2.19E-113 dispersed
Lcy10g1592 Lcy-Chr10:40322577 Lcy13g1039 Lcy-Chr13:22711472 4.69E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00963 . . . . . . . Cmo04g02238 Cmo15g00924 Cma04g02146 Cma15g00885 Car04g02079 Car15g00832 Cpe13g00430 . Bhi12g00970 . . . . . Lcy10g1592 Cla01g00657 Cam01g0687 Cec01g0679 Cco01g0707 Clacu01g0676 Cmu01g0650 Cre09g1857 Lsi09g00710 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39