Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1594 ATGGGTGTGAAAATGCAGCAAAGCTACAACTCTGTGGCTAAGTTGAATGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTCAAGCTAACAGGGCTTGGCTTCGAAAGTATCTTCTGCTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATAACAAAGTGAGGAGGAACGAAGTGTTGGGGAGCATGTGTGAGCAGAGGGCAAGGATGTTGCAGGATCAATTCAGTGTTAGTGTCAATCATGTTCATGCCTTGGCTGTGCTTGTTTCCACCTTTCATTACTTCAAGAGCCCTTCTGCAATTGATCAGGAAACTTTTGCAGAATACACAGCAAGAACTGCTTTCGAACGGCCTCTACTTAGTGGGGTGGCATATGCACAGAGAGTGGTTCATTCGGAGAGGGATATATTCGAAAAGCAACATGGGTGGATGATAAAGACAATGGAAAGAGAACCTTCGCCCATTCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCTTATATTGAATCACTGGATATGATGTCAGGAGAGGAGGACCGTGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTCTTAACAAGCCCCTTCAGGCTGCTGGGTTCTCATCATCTGGGAGTTGTTTTGACGTTCCCCGTTTACAAGTCCAAATTGCCATCTATACCAACAGAAGAAGAACGTATACAAGCAACGGCAGGCTACGTTGGTGGAGCTTTTGATGTCGAGTCACTTGTGGAGAACTTGCTTGGCCAGCTTGCAGGGAATCAGGCCATTTTGGTAAATGTATATGATGTCACAAACTCTTCTGATCCCCTCGTCATGTACGGTCATCAATATCAAGATGGTGATACGTCTCTTTTGCATGAGAGTAGCCTCGATTTTGGAGATCCATTCAGAAAGCATCTGATGATTTGTAGATATCAGCAGAAGGCTCCCACATCCTGGACTGCCCTGACTACTGCATTCTTATTCTTCGTGATTGGGCTGTTAGTTGGATATATTTTGTACGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGATTTCCATGAGATGCAAGAACTGAAAGTTAGAGCAGAGGCTGCTGATGTTGCAAAATCCCAGAGTTTTGGAAATGTGAAGAGTACAGGAGCTCTTGAACCTCCCTTGGATATGTACCTCTATTTTCTTGCAACTGTTTCTCATGAAATTAGAACACCAATGAATGGCATCCTCGGAATGCTTGCTCTGCTTCTAGATACAGATTTAAGTTCAACTCAGAAGGATTATGCTCAGACTGCTCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAACGAGGTTCTCGACCGTGCAAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCATTCGACATTCGATCAATACTCGATGATGTGCTATCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTCGTTTCTGACAAAGTTCCAGAAATTGTAATTGGAGATCCAGGAAGATTCAGACAAATCATAACAAATCTTGTGGGTAACTCTGTGAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTACATCTAGCTGAGCACTCAAAAGGCTCCATTGACTCAAAATATGTCAATGGAATATCTGACAGTAACTTGTTTATATCTGATGGTCGCGAATTTCAAACTTTAAGTGGACGTGAGGCAGCTGATAATCAGAACAGTTGGGATAATTTTAAACATCTAATTGCTGACGAGACCTTTCAATCGAATGCCGCTTCAAACAACCCGGCAGTTGACAATGAGTGTTGTGGTCATGTTACTTTGATGGTAAGTGTGGAGGACACTGGAATTGGAATCCTTTTACATGCCCAAAATCGAGTCTTCATGCCTTTCATGCAAGCAGATAGCTCGACCTCCCGAAACTATGGAGGAACTGGTATCGGCTTGAGTATCAGCAAATGTTTGGTTGAACTAATGGGTGGTCAGATCAACTTCATCAGCCGACCTCAGATTGGAAGCACGTTTTCATTCACTGCTGTTTTAGGAAAATGTAAGAAGAATTCAATCAATGACATGAAAAAACCCAATTCTGAAGAACTTCCCCCCAGTTTCAGAGGAATGAAAGCAATCATAGTTGACAGGAAACCAGTTAGAGCTTCTGTTACCAGATATCATTTGAAGAGACTTGGTATGGTTGTTGAAGTCACCAGTAGCATCAAAATAGCAGCTTCTTTATGCAGAGAAAATGGCTCCACAGTACCAGGAAACACAATCCTTCCAGATATGATCTTGGTTGAAAAAGATACATTAAAGTCTGATGAGGAATGTGGGATCATTCATCAACTGAACTGGAAACTGAACGGGAGTTCGTTTAAGCTACCGAAACTGATCCTTCTCGCTACAAATATTACCGCTGCAGAACTAGACAAGGCAAGGGCAGCAGGTTTTGCAGACACCGTGATCATGAAACCGTTGAGGGCGAGTATGGTGGCTGCCTGTCTTCAACAAGTACTTGGGGTTAAGAATCAGAGACGGGGAAGGGGCCTACCGAATGGTTCTGCTTTCCTCCAGAGCCTTCTTTGTGGCAAGAGAATCTTAATTGTCGATGACAATAGAGTTAACCGTCGGGTCGCTGCAGGCGCTCTGAAGAAATTCGGTGCAGATGTTGAGTGTGCAGATAGCGGGAAAGCTGCCCTGAAGTTGCTTCAGCTACCGCACAATTTCGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTCGAGGCGACTCGTCTTATCAGGCAGATGGAGAGCAAGGCAAACGAAGGAGGATCATCTGCAGCAGAAGGCGCATGGCATGTACCAATATTAGCAATGACTGCAGACGTGATTCATGCAACGTATGACGAATGCCTGAAATCCGGAATGGATGGCTACGTCTCGAAACCCTTTGAGGAAGAAAATCTATACAAGGAAGTTGCCAAGTTTTTCAAAAAATCATAG 3027 43.34 MGVKMQQSYNSVAKLNEQMGTTKKGYTFVQANRAWLRKYLLLWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKSPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVHSERDIFEKQHGWMIKTMEREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSIPTEEERIQATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDTSLLHESSLDFGDPFRKHLMICRYQQKAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADVAKSQSFGNVKSTGALEPPLDMYLYFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSKYVNGISDSNLFISDGREFQTLSGREAADNQNSWDNFKHLIADETFQSNAASNNPAVDNECCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVLGKCKKNSINDMKKPNSEELPPSFRGMKAIIVDRKPVRASVTRYHLKRLGMVVEVTSSIKIAASLCRENGSTVPGNTILPDMILVEKDTLKSDEECGIIHQLNWKLNGSSFKLPKLILLATNITAAELDKARAAGFADTVIMKPLRASMVAACLQQVLGVKNQRRGRGLPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGFEATRLIRQMESKANEGGSSAAEGAWHVPILAMTADVIHATYDECLKSGMDGYVSKPFEEENLYKEVAKFFKKS 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40367834 40376988 + Maker00039351 Lcy10g1594 645105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1594 1008 CDD REC_hyHK_CKI1_RcsC-like 877 1001 - -
Lcy10g1594 1008 Pfam His Kinase A (phospho-acceptor) domain 404 465 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy10g1594 1008 Gene3D CHASE domain 111 326 IPR042240 -
Lcy10g1594 1008 ProSiteProfiles Response regulatory domain profile. 876 1005 IPR001789 GO:0000160(InterPro)
Lcy10g1594 1008 Coils Coil 450 470 - -
Lcy10g1594 1008 SUPERFAMILY CheY-like 715 852 IPR011006 -
Lcy10g1594 1008 SMART CHASE_2 107 292 IPR006189 -
Lcy10g1594 1008 Pfam Response regulator receiver domain 877 1001 IPR001789 GO:0000160(InterPro)
Lcy10g1594 1008 FunFam Histidine kinase 4 111 326 - -
Lcy10g1594 1008 CDD HATPase_EvgS-ArcB-TorS-like 517 693 - -
Lcy10g1594 1008 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 618 690 IPR003594 -
Lcy10g1594 1008 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 454 690 IPR036890 -
Lcy10g1594 1008 CDD HisKA 404 461 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy10g1594 1008 PRINTS Bacterial sensor protein C-terminal signature 655 673 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy10g1594 1008 PRINTS Bacterial sensor protein C-terminal signature 679 692 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy10g1594 1008 PRINTS Bacterial sensor protein C-terminal signature 638 648 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy10g1594 1008 PRINTS Bacterial sensor protein C-terminal signature 620 634 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy10g1594 1008 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 402 466 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy10g1594 1008 ProSiteProfiles Histidine kinase domain profile. 407 695 IPR005467 -
Lcy10g1594 1008 SUPERFAMILY CheY-like 874 1004 IPR011006 -
Lcy10g1594 1008 SMART REC_2 875 1001 IPR001789 GO:0000160(InterPro)
Lcy10g1594 1008 Gene3D - 399 463 - -
Lcy10g1594 1008 Gene3D - 58 110 - -
Lcy10g1594 1008 Gene3D - 464 698 IPR036890 -
Lcy10g1594 1008 Gene3D - 714 856 - -
Lcy10g1594 1008 Gene3D - 870 1008 - -
Lcy10g1594 1008 PANTHER TWO-COMPONENT HISTIDINE KINASE 404 1005 IPR050956 -
Lcy10g1594 1008 SMART HKATPase_4 512 695 IPR003594 -
Lcy10g1594 1008 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
Lcy10g1594 1008 SMART HisKA_10 400 465 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy10g1594 1008 Pfam CHASE domain 110 290 IPR006189 -
Lcy10g1594 1008 ProSiteProfiles Response regulatory domain profile. 720 850 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1594 Lcy-Chr10:40367834 Lcy3g1254 Lcy-Chr3:38292846 0 dispersed
Lcy10g1594 Lcy-Chr10:40367834 Lcy7g1375 Lcy-Chr7:20450681 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19008 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1594 K14489 - csv:101209777 1786.54