Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1596 ATGGCTGACGAAGCAGTAACTGGACGAGTTACGACCAAGGTCGATGTTTATAGCTTTGGGGTGATTCTCATGGAAATGATAAGCGGTAGAAAAGCAATCGACGATAGCCAACCAGAAGAGAGCTTGCACCTTGTTTCATGGTTCCGCAGAATGTACAATAACAAGGGTACTTTCCCAAAGGCCATAGACCCTTCAATTCACATAGACGAGGAGACCCTTGGCAGCATCACCACTGTTGCGGACTTGGCTAGCCATTGCTGTGCAAGGGAGCCATACCAGCGGCCCGACATGAGTCATGCAGTCAACGTGCTTTCGTCTCTACTCGATGTCTGGAAGCCTACAGAACCAGACTCTGAAGAGACGTTGGGAATTGATCTCGAGATGTCACTACCACAGGCACTTAAGAAATGGCAGGCATTTGAAGGAAATAGCAATATGGATCAGTCGTCCTCTTCATCATCATTCCTTGCCAGTAGAGACAACACGCAAACCAGCATCCCGAACCGGCCATCTGGTTTTGCGAATTCATTCACCTCTGTCGACGCACGGGAAGATAATGCAATTGTAGAAAATGGCACTTAG 582 48.11 MADEAVTGRVTTKVDVYSFGVILMEMISGRKAIDDSQPEESLHLVSWFRRMYNNKGTFPKAIDPSIHIDEETLGSITTVADLASHCCAREPYQRPDMSHAVNVLSSLLDVWKPTEPDSEETLGIDLEMSLPQALKKWQAFEGNSNMDQSSSSSSFLASRDNTQTSIPNRPSGFANSFTSVDAREDNAIVENGT 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40393471 40394483 + Maker00039568 Lcy10g1596 645107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1596 193 ProSiteProfiles Protein kinase domain profile. 1 108 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1596 193 PANTHER OSJNBA0070M12.3 PROTEIN 5 183 IPR052422 -
Lcy10g1596 193 MobiDBLite consensus disorder prediction 143 193 - -
Lcy10g1596 193 MobiDBLite consensus disorder prediction 143 182 - -
Lcy10g1596 193 Gene3D Transferase(Phosphotransferase) domain 1 1 123 - -
Lcy10g1596 193 Pfam Protein tyrosine and serine/threonine kinase 2 100 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1596 193 SUPERFAMILY Protein kinase-like (PK-like) 7 130 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1596 K00924 - - csv:101210025 310.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1596 Lcy-Chr10:40393471 Lcy5g1291 Lcy-Chr5:30557563 2.25E-50 dispersed
Lcy10g1596 Lcy-Chr10:40393471 Lcy13g0883 Lcy-Chr13:15333608 6.45E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022963 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65399 None None None None Lcy PK