Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1597 ATGGCTCTCCCTCCGCTTGAGTGTATATATGTCGTAGAAAGCAATCTTCGCGAATGGAAGTCCGGGAACTCGAGCTTTAGGGTTCCTCACCCTGTCCCTGTTCTTCGTTTCCTTTACGAGCTCTGCTGGACCATGGTTCGAGGCGAATTGCCATTTCAGAAGTGTAAGGCAGCATTGGATTCAGTAGAGTTCTCGGACAAAATGTCTGCGGAGGAGTTAGGATCGAATTTTGCCGATGTCATTACCCAATTGGCCCAAGATATCACATTACCAGGAGAGTATCGTGTTCGGCTTTTAAAATTGGCTAAATGGCTGGTTGAATCTGCATTTGTTCCATTGAGGCTTTTCCAGGAGCGGTGTGAGGAAGAATTTCTATGGGAGGCTGAAATGATAAAGATTAAGGCACAAGAATTGAAAAACAAAGAGGTCAGAGTAAATACTCGTCTTCTTTATCAGCAAACAAAGTTTAATCTTCTGCGGGAAGAAAGTGAGGGCTATGCCAAGTTGGTAACACTTCTTTGCCGTGTCACCGACGCTTCAAGTAATAATTTGCCGGGTTCAACAATTGGTATTATAAAGTCATTGATTGGCCATTTTGATCTGGACCCAAATCGTGTTTTTGACATTGTCTTGGAATGTTTTGAACTTCAGCCAGAGAATAGTGTTTTTGTGGAGCTAATTCCAATATTTCCCAAGTCTCATGCTTCACAAATCCTTGGGTTCAAATTCCAATATTATCAGCGCATCGAAGTAAATTCGCCAGTGCCGTTTGGGCTTTATAAACTTACAGCGTTACTAGTGAAGGAAAAATTTATTGATCTTGATAGCATAAGACCTATTACTGTCCTCGAAGACGTTGAAACTTTGCAGGAAAACAGATTGCAACAGAGGTTTCTTATGGGTCCAGAAAACTGCGAACAAGAGAGAGGATTTCTTAGAAGTAACAAAGGTGCACATCTCAGAAGGAAATCGAAACCTAGTGATCCTTGTGGATATGGACTTCAAAGCGAAGTGAGACTGGTGGATAGGGAGCAACTGTTTATTGCACATGCAGTAACATTTGAAAACCACAACTGGCTGATCGGAAATGTCGTCAGAAAACATGGCGGTTTCATGATGGAAGCAACAAGGAATTTTTACGGTGCAAAAGAAGACATCCCTCCTTTTGAAGTATGGGGTCTCGAAATTGGCGCTTTTAAGCAAAGAAATAATGCGTTGCTTTTGAAATGGATGTGGCGTTTCAATCGTGAGGGAAGCCCTTCGGAGAAAGGTCATTGTTGGAGATGGCTGATGGAGGAATTCAACATGGCTACATGCCTCCCAAACAGAATTGAGGACGGATATGCACATCTACTCCCCAAGGAGGATGAGGCATTTGAGCATTATGATTCCTTTTCTTCCAAACGACTTGATGAGGTGGATTTTGCTTTCTGTTTGACAGTCATCGTTCGGAGATTGAATGAAGAGGTTTTAGCTCGGGTTTGTGTTGAAACCGTAGCGGCTAACAGAATAGGGAAAATAAATCTTGCGGCAACTGGAAAGGATCTAATGGATGATGAGAAGCAAGGAGATGTAAGCATTGATCTTTTTGCTGCTCTTGGTATGGAAAGTGAGGCAGTCAATGAAAGGTCTCCAGAGCTGGAAAATAATCAAACATTGGGCTTGCTTACAGGATTTCTTTCTGTGGGTGACTGTAATGTTGTTGAGGATTTAATGGATCCTTCTAATGCCGAGGAGTCTATTTTTTCCCTAATATGGAAGGTGAATGTTCCAAAAAAGGTTCAGTTTTTCATTGGACAGGTTTTCCATGGAAGAGTTAATACTCTTGATCGACTTTTGAGAAAGATGCCTTCCTTGATTGGGTCGTTTTGTTGCATCCTCTGTCGGATGGCAGAGGAAGACCTTGATCACATTTTATGGAGTTGCGATTTTGCTAGTTCGGTTTGGAATGAGTTTTTCGCTTTGTTTGGTTTGCAGTTTTCCTGTTACTGGAGTTCCTTCCCCATCCTCCTTTTTGGGAGCAAGGAAATTTTCTATGGCAAACTGAGATTTGTGCTATTGTTTGGGGATTATGGGATGAGAGAAACAATAGGACCTTTCGAGGGACAAAGAGGAAATCTGATGATATTTGGTCCTTGGCTAGATATTATGTCTCTCTTTGGACGTCGGTATCATGCACATATACTGTTTGATCGGCTTTCACCTCTCAATCCAGTGGAACACCTTCCAATTTGTAACAGCTTGTTTAGGCTCATAGAAGAATCAATCTCGGCTGCATACTCAATTGTTCGTCAGAGTTCTCATCAGATCTTTGGGACCTCTTCAGGAACTAGCATTGATACTACAGATACCACGAGTTTGCCTGTTGGTGGTTCTTTTATAGATCTTCCAAGGGAACTTTTCCAGATGCTTGCTGCTGCTGGACCTTATCTCTATCGTGATACAATTCTGCTGCAGAAGGTTTGTCGGGTGCTGAGAGGCTATTATATGTCTGCACTTGAGTTTGTCAACAGTGTGGAAAGTGGTTCGAATCCTGAATTTGTTATGCCAGCTGGAAACCGGGTTCCTCATCTTCACTTAAAGGAAGCTAGGTTGAAGATTGAGGAAGCCTTAGGAACGTGTCTACTTCCTTCTTTACAGTTGATACCTGCCAATCCAGCTGTTGGTCAAGGAATATGGGAGGTTATGAATCTTCTTTCATATGAGGTGCGATATCGTTTATATGGTGAATGGGAGAAAGATGATGAGAAGACTCCAATGGTTTTGGCTGCAAGGCAAACCGCAAAGTTGGACACACGGAGAATTTTGAAGCGGTTGGCTAAGGAGAATTTGAAGCAATTGGGTAGGATGGTTGCAAAACTTGCTCATGCTAATCCAATGACTGTCCTTCGCACAATAGTACACCAGATTGAGGCATATAGGGATATGATTACTCCTGTAGTAGATGCATTCAAGTATCTGACTCAGCTTGAGTATGACATATTGGAATATGTTGTGATTGAACGTTTGGCACAAGGAGGGCGTGATAAGTTGAAGGATGATGGCCTTAATCTGTCAGATTGGCTCCAATCATTAGCTTCCTTTTGGGGTCACCTGTATGTTTCTCCTCTCTTTCACATATAA 3123 42.3 MALPPLECIYVVESNLREWKSGNSSFRVPHPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSNFADVITQLAQDITLPGEYRVRLLKLAKWLVESAFVPLRLFQERCEEEFLWEAEMIKIKAQELKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRVTDASSNNLPGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKSHASQILGFKFQYYQRIEVNSPVPFGLYKLTALLVKEKFIDLDSIRPITVLEDVETLQENRLQQRFLMGPENCEQERGFLRSNKGAHLRRKSKPSDPCGYGLQSEVRLVDREQLFIAHAVTFENHNWLIGNVVRKHGGFMMEATRNFYGAKEDIPPFEVWGLEIGAFKQRNNALLLKWMWRFNREGSPSEKGHCWRWLMEEFNMATCLPNRIEDGYAHLLPKEDEAFEHYDSFSSKRLDEVDFAFCLTVIVRRLNEEVLARVCVETVAANRIGKINLAATGKDLMDDEKQGDVSIDLFAALGMESEAVNERSPELENNQTLGLLTGFLSVGDCNVVEDLMDPSNAEESIFSLIWKVNVPKKVQFFIGQVFHGRVNTLDRLLRKMPSLIGSFCCILCRMAEEDLDHILWSCDFASSVWNEFFALFGLQFSCYWSSFPILLFGSKEIFYGKLRFVLLFGDYGMRETIGPFEGQRGNLMIFGPWLDIMSLFGRRYHAHILFDRLSPLNPVEHLPICNSLFRLIEESISAAYSIVRQSSHQIFGTSSGTSIDTTDTTSLPVGGSFIDLPRELFQMLAAAGPYLYRDTILLQKVCRVLRGYYMSALEFVNSVESGSNPEFVMPAGNRVPHLHLKEARLKIEEALGTCLLPSLQLIPANPAVGQGIWEVMNLLSYEVRYRLYGEWEKDDEKTPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNLSDWLQSLASFWGHLYVSPLFHI 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40400557 40432375 + Maker00039883 Lcy10g1597 645108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1597 1040 PANTHER THO2 PROTEIN 444 573 IPR040007 GO:0000347(InterPro)|GO:0000445(PANTHER)|GO:0003729(PANTHER)|GO:0006397(InterPro)|GO:0006406(InterPro)|GO:0006406(PANTHER)
Lcy10g1597 1040 Pfam THO complex subunit 2 N-terminus 786 949 IPR032302 -
Lcy10g1597 1040 Pfam THO complex subunit 2 N-terminus 37 279 IPR032302 -
Lcy10g1597 1040 Pfam zinc-binding in reverse transcriptase 572 649 IPR026960 -
Lcy10g1597 1040 Pfam Transcription- and export-related complex subunit 951 1026 IPR021726 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1597 K12879 - - csv:101221461 566.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1597 Lcy-Chr10:40400557 Lcy8g2210 Lcy-Chr8:48179212 5.25E-40 dispersed
Lcy3g1633 Lcy-Chr3:43546515 Lcy10g1597 Lcy-Chr10:40400557 3.95E-16 dispersed
Lcy10g1597 Lcy-Chr10:40400557 Lcy7g1211 Lcy-Chr7:14783455 8.02E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40