Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1599 ATGTCTTTCGCCGCCATCCATCTCTCCATCCTCTTCCTCTTCTTCTTCACATCTCCGGCCGCCGCCCAACGCAACTTCTCCGCCTTCTCACTCTCCCATTCCCCATGGCGGCCATCCCAGAATCTCATTCTCCTCTCCCCCAACTCCCTCTTCGCCGCCGGCTTCCGGCAACTACCAAACAACTCCAATCTCTTCGTCTTCTCCGTTTGGTACTTCAACATCTCAACAGACGACGTCGTTTGGTCCGCCAACCATCTTTCTCCGGTTAACCGCTCGGCGGCTTTGTCCATCACGGCCACCGGCCAACTCCGTCTCGACAACGGCACCGGCCGCAATCTCTGGCCTTCCACTGTTTCTGGGAATCCAAATTCGACCCGATTAATCCTTCGCGACGATGGTGATTTGATTTACGCCACATGGGAGAGCTTCCAATTTCCCACCAACACCATTTTGCCGAATCAGACATTGAATGGAACCACCATCGTCTCCAGCAACGGCAAATATAAGTTCGTGAACTCTGTTAATTTGACGTTTGGTACAGATCGGTACTGGACCTCTGGAAATCCCTTCCAGACTTTCCTAATGGAAGGTCGAATCATCGTAAACAATCAAAACCCAATTACCCCTTCTGATTTTAACTCGACCCGGCTGAGGAAATTGGTTGTTGACGATGATGGGAATCTCAAGATTTTGAGCTTCAACCCAAATATCCGGCGGTGGGATGTGGCTTGGCAAGCACATGTAGAGTTGTGTGCAATCTTCGATACTTGTGGCCCAAATTCCATCTGTATGAGTCGTGGCAGTTACAATTCCACCTACTGTGTATGCGCCCCGGGATTCAGCCCTGATCCTCGCGGCGGACCGCGGAAAGGATGCCGCCGGAAACTCAACTTATCGGAGAAAATCAAGTTTCTTCAGCTCGATTTTGTGAGTTTCAGAGGTGGGGTTAAACAAGTTTCACTGCAAACCCCAAATATTTCGGTCTGTGAAGCGAGTTGCTTGAAGAATTCGAGCTGCGTGGGCTTCACATTCATCTACGATGGCGGCGCCCAGTGCGCGCTTCAGCTGGACAATTTGTCGAACGGGTTGTGGTCGCCAGGGATGAAGATAGCTACCTTTGTGAAGGTCGACAATTCCGAAACCGATCGGTCAAATTTCACCGGAATGATGTTCAAACTCCAAACGACATGTCCAATTCACATCAGCCTCCGGCCACCGCCGGAAAATAAAGACCACACCACCAGAAACGTATTGATAATCGTCACTATATTCATCGCCGAACTAATTTCCGGGGCGGTTTTCTTCTGTGCATTCTTGAAGAGATTTGTAAAATACAGAGACATGGCTCGCACGCTAGGTCTAGAATCACTTCCCGCCGGTGGGCCGAAGCGGTTCACCTACGCCGAGCTGAAGACGGCCACCAACAACTTCTCGAACTGCATCGGGAGAGGCGGATTCGGCGAGGTCTTCAAAGGGGAGCTGCCGGACAAACGTGTCGTCGCCGTCAAGTGCTTGAAGAACGTCGCCGGCGGCGACCGCGATTTCTGGGCCGAGGTCACCATCATCGCTAGAATGCACCATCTCAATTTACTCCGATTGTGGGGATTCTGCGCCGAAAAGGGTCAGAGAATCTTAGTCTACGAGCATATTCCCAATGGATCGCTCGACAAATTCCTCTTCGGCAAACCTCCGCCGTCCGATTCAACCGAAACGGATGGAGAAAAGGAAAACCCATCGCTCGATTGGGGCATCCGGTACAGAATCGCCATCGGAGTCGCGAGAGCAATCGCGTACTTGCACGAGGAATGTCTGGAGTGGGTGTTGCATCGAGACATAAAACCGGAAAACATCCTTCTGGACAACGATTTCTGCCCGAAATTATCGGATTTCGGGCTGTCGAAACTGAGGAAAAACGACGAGACAGCGGTGAGCATGTCTCGGATCAGAGGGACGCCCGGTTACGTGGCGCCGGAGCTGGTGAAATTGGGTTCGAATTCGATCACGACGAAGGCGGATGTGTACAGTTTCGGAATGGTGCTGCTAGAGATCATCAGCGGGACGAGGAACTGTGAGATCAGAAGATCGACGGTGGAGAGCGCGGAATTGTACTTTCCGGGATGGGCGTTCGAGAAAGCGTTCGTGGAGGAGAAGATGGAGGACATTTTGGACGGTCGGATCAGGAATGAGTACGACATTGGAGCCCATTTCGCCATGGTTAACCGTATGGTGCAGACGGCGATGTGGTGTCTTCAGAACCAGCCGGAGACGAGACCGTCGATGGGGAAGGTGGTGAAGATGCTGGAAGGGAAGCTTGAGATTCCTCCCCCGGAAAAACCTTCTATTTACTTCTTAGAAACCGAACCAACTTCCTTTAGAGTTACTCATGTTTGA 2391 51.74 MSFAAIHLSILFLFFFTSPAAAQRNFSAFSLSHSPWRPSQNLILLSPNSLFAAGFRQLPNNSNLFVFSVWYFNISTDDVVWSANHLSPVNRSAALSITATGQLRLDNGTGRNLWPSTVSGNPNSTRLILRDDGDLIYATWESFQFPTNTILPNQTLNGTTIVSSNGKYKFVNSVNLTFGTDRYWTSGNPFQTFLMEGRIIVNNQNPITPSDFNSTRLRKLVVDDDGNLKILSFNPNIRRWDVAWQAHVELCAIFDTCGPNSICMSRGSYNSTYCVCAPGFSPDPRGGPRKGCRRKLNLSEKIKFLQLDFVSFRGGVKQVSLQTPNISVCEASCLKNSSCVGFTFIYDGGAQCALQLDNLSNGLWSPGMKIATFVKVDNSETDRSNFTGMMFKLQTTCPIHISLRPPPENKDHTTRNVLIIVTIFIAELISGAVFFCAFLKRFVKYRDMARTLGLESLPAGGPKRFTYAELKTATNNFSNCIGRGGFGEVFKGELPDKRVVAVKCLKNVAGGDRDFWAEVTIIARMHHLNLLRLWGFCAEKGQRILVYEHIPNGSLDKFLFGKPPPSDSTETDGEKENPSLDWGIRYRIAIGVARAIAYLHEECLEWVLHRDIKPENILLDNDFCPKLSDFGLSKLRKNDETAVSMSRIRGTPGYVAPELVKLGSNSITTKADVYSFGMVLLEIISGTRNCEIRRSTVESAELYFPGWAFEKAFVEEKMEDILDGRIRNEYDIGAHFAMVNRMVQTAMWCLQNQPETRPSMGKVVKMLEGKLEIPPPEKPSIYFLETEPTSFRVTHV 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40445924 40448314 + Maker00039468 Lcy10g1599 645110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1599 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1599 796 Pfam S-locus glycoprotein domain 203 282 IPR000858 GO:0048544(InterPro)
Lcy10g1599 796 ProSiteProfiles EGF-like domain profile. 247 283 IPR000742 -
Lcy10g1599 796 SMART blect_4 39 146 IPR001480 -
Lcy10g1599 796 SUPERFAMILY Protein kinase-like (PK-like) 457 768 IPR011009 -
Lcy10g1599 796 Gene3D Transferase(Phosphotransferase) domain 1 550 773 - -
Lcy10g1599 796 Gene3D - 35 145 IPR036426 -
Lcy10g1599 796 CDD STKc_IRAK 481 769 - -
Lcy10g1599 796 PANTHER OS07G0415500 PROTEIN 29 789 - -
Lcy10g1599 796 Pfam Protein kinase domain 479 765 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1599 796 SMART serkin_6 475 767 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1599 796 CDD B_lectin 44 146 IPR001480 -
Lcy10g1599 796 CDD EGF 251 285 - -
Lcy10g1599 796 ProSiteProfiles PAN/Apple domain profile. 292 383 IPR003609 -
Lcy10g1599 796 PIRSF SRK 1 795 IPR024171 GO:0004674(InterPro)
Lcy10g1599 796 FunFam S-receptor-like serine/threonine-protein kinase 446 549 - -
Lcy10g1599 796 Pfam D-mannose binding lectin 79 157 IPR001480 -
Lcy10g1599 796 ProSitePatterns Protein kinases ATP-binding region signature. 481 503 IPR017441 GO:0005524(InterPro)
Lcy10g1599 796 ProSiteProfiles Bulb-type lectin domain profile. 35 150 IPR001480 -
Lcy10g1599 796 Gene3D Phosphorylase Kinase; domain 1 445 549 - -
Lcy10g1599 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 188 IPR036426 -
Lcy10g1599 796 ProSiteProfiles Protein kinase domain profile. 475 771 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1599 796 Pfam PAN-like domain 320 361 IPR003609 -
Lcy10g1599 796 FunFam Serine/threonine-protein kinase 550 778 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1599 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1375 Lcy-Chr10:37022135 Lcy10g1599 Lcy-Chr10:40445924 0 dispersed
Lcy10g1599 Lcy-Chr10:40445924 Lcy5g0167 Lcy-Chr5:1688066 9.30E-123 dispersed
Lcy10g1599 Lcy-Chr10:40445924 Lcy4g0600 Lcy-Chr4:7200588 4.18E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65400 None None None None Lcy PK