Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1600 ATGCTTGATCTCCAACACTTCATGTCACCACCTTCCTCATTCGCACCAAAATCAATGCCTCTTCCAATTTCTCTATCACCGTCGGATCAAATCTTTGTATTGTCACCATCGGCGCCCCGTAAAACCACCAACAAATCCACATTGAATTTGGTGCAGAGGAATGCTGAATTTTCCGAGAAATTCAGTGTTTTTGATCGGTTCTTCATCGACCCAGAAGTGGGAGTTGCTTCAAATTGCATTTGGATATGGCATTGCCTGATATCTCATTGCGTTCATCGGCGGCTACAGATCTGCAAGTATGTTTATCAGTACGTCGTTCGTGTGCCCGACCTGCAGAACCTCCTTGATTGTTGCAGCATTCAGACTTATAAGATAAATGGGGAGAAGGCTGTTCATTTGAGTCCCCGTCCGCAATCAAAAGATTCGAAACCGTCGACAAAATTGAAGTTTGGAGGTACTTGTGAAGCTTGTGGGAGATACATACAAGACTTGCCCAACCGCTTCTGCTCGATCGCTTGCAAAGTCTCCATGGTTCCAGTGGAACTTAACAATCAAAGTTGTAGATGCACCACTTCGGAGGCGAATCTCGACGACATTCCATGGAAGGAGAATCACAATCTAGAAACCAATACAAGTGAAATGGAATCGTCTATCTCGATGGCTGAATCAACTGAAGAGATCAAAGCATGGCGAGTGAAGTCAATCTTGAATCCAAAGAAGCTTTTGCATAAAAGGAAGGGCATTCCGCATCGATCGCCTCTAAAGTAA 768 44.4 MLDLQHFMSPPSSFAPKSMPLPISLSPSDQIFVLSPSAPRKTTNKSTLNLVQRNAEFSEKFSVFDRFFIDPEVGVASNCIWIWHCLISHCVHRRLQICKYVYQYVVRVPDLQNLLDCCSIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFGGTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCTTSEANLDDIPWKENHNLETNTSEMESSISMAESTEEIKAWRVKSILNPKKLLHKRKGIPHRSPLK 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40449517 40453424 - Maker00039197 Lcy10g1600 645111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1600 255 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 83 254 - -
Lcy10g1600 255 Pfam PLATZ transcription factor 99 175 IPR006734 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1600 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1600 Lcy-Chr10:40449517 Lcy7g1123 Lcy-Chr7:12468670 1.78E-36 dispersed
Lcy10g1600 Lcy-Chr10:40449517 Lcy12g1952 Lcy-Chr12:40895620 4.59E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g526 . . . . Bpe13g01001 . . . . . . Cma04g00083 . Car04g00084 . Cpe09g00608 Cpe01g01855 . . . . . . . . . . . . . . . . . Cone9ag0379 . Csa05g01972 . . . . . . . . . Bma06g01137 . Cmo04g02230 . Cma04g02137 . Car04g02074 . . . Bhi12g00959 . . . Hepe02g2605 . Lcy10g1600 Cla01g00649 Cam01g0678 Cec01g0671 Cco01g0697 Clacu01g0666 Cmu01g0639 Cre09g1866 Lsi09g00702 Csa05g01125 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002993 1 2 0 1 1 2 3 2 2 0 2 2 2 1 2 2 2 1 3 2 2 1 2 2 2 2 2 3 3 1 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19009 None None None None Lcy TF