Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1602 ATGGAAGAGGCAATCGATCGATTTCTTAAATGGTGTCTGTTGTACCTTGTAGCTTTGTGCTTAAGCTTAACAATGGGGGGTTCATTAGTTGCTTCTCTATCTCCTGATGGGGAAGCGCTTCTCTCTCTCATTGATGCTGCTGGTTCTTCTGTAGCATCGTCTTCCTCTGTTCTTGCTTCTTGGAATCCATCTAGCCAGAATCCTTGTGCTTGGGAAGGAATCACTTGCTCTCCTCAGAACAGAGTCATTTCACTTTCTCTTCCAAAAACATTCCTAAACCTCTCGTTTTTGCCTCCTGAGTTGTCTTCTCTATCTTCTCTGCAACTGCTCAATCTCTCTTCCACCAATGTATCTGGTTCAATCCCTCCTTCTTTTGGTCTACTCACCCATCTTCGCCTGTTGGACCTTTCTTCCAACAATCTCTATGGCTCTATTCCTCCTCAGCTTGGTTCTCTTTCTTCCCTTCAATTCCTTTTCCTGAATTCCAATAGACTGTCTGGTAAGATTCCTCCGCAGCTTGCTAATTTGACTTCTCTGCAAAGTCTTTGCCTCCAAGACAATCTGTTTAACGGCTCCATACCATCACAGTTTGGTTCTTTGGTGTCACTCCAAGAGTTTCGAATCGGAGGGAATCCGTATCTTTCTGGAGAGATTCCGCCGCAGATAGGGCTACTTACTAATCTCACTACATTTGGGGCAGCGGCTACCGCCCTTTCTGGAGCTATACCGTCTACATTTGGGAACCTTATCAACCTCCAAACATTGTCACTCTATGATACTGAGATGTCTGGTTCAATACCACCTGAGCTGGGACTCTGTTCTGAGCTAAGGGATTTGTATTTACACATGAACAAGCTCAATGGTTATATTCCTCCTCAGCTGGGTAGGTTGCAGAAGCTTACTAGTTTGTTTCTCTGGGGCAACGCTCTATCCGGGGCGATACCGTCTGAAATTTCAAATTGTTCGGCTCTTGTTGTTTTTGATGCTTCAGAGAATGATCTTTCTGGTGAAATCCCAAGTGATTTAGGAAAGTTGGTCGTTCTTGAACAGTTTCATGTATCTGACAATTCAATCTCGGGTTCGATACCATGGCAGTTGGGCAACTGCACAAGCTTAACTGCCCTTCAGCTGGATAATAATCAATTATCAGGCGTAATTCCACCACAACTTGGCAATTTGAAATCCCTGCAAAGTTTTTTCTTATGGGGCAATTCTGTATCAGGAACCATACCATCTTCCTTTGGCAACTGCACTGAGTTATATGCCCTTGATCTTTCAAGAAATAAGCTCACTGGGGTAATCCCAGAAGAAATTTTCAGCTTGAAGAAGTTGAGCAAGCTTTTGCTCCTTGGGAATTCTTTATCTGGCGGCTTGCCGCGGAGTGTCGCGAATTGTCAATCATTGGTGAGGTTGAGGCTCGGAGAAAACCAGCTTTCAGGCCAGATTCCAAAAGAGGTAGGCCGGTTGCAAAATCTTGTCTTTCTTGACTTGTATATGAATCATTTTTCGGGTGGTCTTCCGTCTGAGATTGCTGATATTACAGTTCTTGAGCTACTTGATGTGCATAATAATTATATAACTGGAGAAATTCCTCCCCAGCTTGGGGAGTTGGTGAACTTGGAGCAGCTTGATCTCAGTCGAAACAGCTTCACTGGTGAAATTCCTGAAAGTTTTGGAAACTTCAGTTATTTGAATAAACTTATTCTCAACAATAATCTACTGACAGGGTCAATTCCAAGGTCCATTAAGAACCTGGAGAAACTAACTCTACTTGATTTGAGTTACAACAGTCTCTCTGGCACGATACCACCAGAAATTGGTTATATGAAGAGCTTGTCAATCAGTCTAGACTTGAGCTCGAACAGGATAACCGGAGAAATTCCTGAGACGATGTCCAGTTTGACACAGTTACAATCACTTGATCTTTCTCATAACATGTTTTATGGAAATATTAAAGTGTTGGGTTTCTTGACTAGTCTCACTTCCCTTAATATCTCCTACAACAATTTCTCTGGTCCCATGCCTGTAACACCATTTTTTCGAACCCTATCAGAGGATGCATATTATCAAAACCTGAATCTTTGTGAATCACTTGATGGGTTTACTTGTTCCTCGAGTTCAATGCGAAGAAATGGCTTAAAGTCTGCAAAAGCTGCTGCTTTAATCACCATCATTCTAGCTGCAGTTGTGGCCCTAGTTTTTGCATTGTGGATGCTAGTTTCACGAAATCGTAAGTACATGGCAGAAAAACATTCCATGGCATTGTCCTCGTCGTCAGCTGCAGAGGATTTCTCTTATCCATGGACCTTCATCCCGTTTCAGAAGCTCAATTTTACTATAGATAACATCTTGGAATCTATGAAAGATGAAAACATAATTGGAAAAGGTTGTTCTGGGGTTGTTTATAAAGCAGATATGCCAAATGGTGAGTTAGTTGCTGTGAAGAAACTGTGGAAAACTAAGCAAGATGAAGAAGCAGTCGACTCGTGCGCTGCAGAGATTCAAATTCTCGGGCATATTCGACATCGTAACATAGTGAAGCTCATAGGTTATTGTTCCAATAGAAGTGTCAAGCTACTTCTCTACAACTACATTTCAAATGGTAATCTGCAACAACTCTTGCAAGGAAACAGAAATTTGGACTGGGAGACTAGGTATAAGATTGCAGTTGGGACGGCCCAGGGTCTGGCTTATCTTCATCATGATTGTGTGCCTGCAATTCTTCACAGAGATGTCAAATGCAATAACATACTTCTGGATTCAAAGTTTGAAGCTTATCTAGCTGATTTTGGCTTGGCAAAGTTGATGAACACTCCAAATTATCACCATGCAATTTCGAGAGTAGCCGGGTCTTACGGTTATATCGCCCCAGAATACGGATATACCATGAACATAACGGAGAAGAGTGATGTCTATAGCTACGGAGTTGTTCTGCTAGAGATACTAAGCGGTCGCAGTGCAATTGAGTCTCAAGTTGGAGATGGCCTTCACATTGTTGAGTGGGTGAAGAAGAAGATGGCAAGCTTCGAACCCGCCATAACAATACTCGATGCAAAGCTCCAGGGTTTACCAGATCAGATGGTACAAGAAATGCTTCAAACACTTGGTATAGCAATGTTTTGTGTGAACTCCTCTCCAGCAGAAAGGCCGACAATGAAGGAAGTGGTAGCATTATTGATGGAGGTGAAGAGCCCTCCAGAAGAATGGGGCAAAACCTCCCAACCTCTAATAAAGCAGACCTCAAATTTAAGTTGA 3255 42.55 MEEAIDRFLKWCLLYLVALCLSLTMGGSLVASLSPDGEALLSLIDAAGSSVASSSSVLASWNPSSQNPCAWEGITCSPQNRVISLSLPKTFLNLSFLPPELSSLSSLQLLNLSSTNVSGSIPPSFGLLTHLRLLDLSSNNLYGSIPPQLGSLSSLQFLFLNSNRLSGKIPPQLANLTSLQSLCLQDNLFNGSIPSQFGSLVSLQEFRIGGNPYLSGEIPPQIGLLTNLTTFGAAATALSGAIPSTFGNLINLQTLSLYDTEMSGSIPPELGLCSELRDLYLHMNKLNGYIPPQLGRLQKLTSLFLWGNALSGAIPSEISNCSALVVFDASENDLSGEIPSDLGKLVVLEQFHVSDNSISGSIPWQLGNCTSLTALQLDNNQLSGVIPPQLGNLKSLQSFFLWGNSVSGTIPSSFGNCTELYALDLSRNKLTGVIPEEIFSLKKLSKLLLLGNSLSGGLPRSVANCQSLVRLRLGENQLSGQIPKEVGRLQNLVFLDLYMNHFSGGLPSEIADITVLELLDVHNNYITGEIPPQLGELVNLEQLDLSRNSFTGEIPESFGNFSYLNKLILNNNLLTGSIPRSIKNLEKLTLLDLSYNSLSGTIPPEIGYMKSLSISLDLSSNRITGEIPETMSSLTQLQSLDLSHNMFYGNIKVLGFLTSLTSLNISYNNFSGPMPVTPFFRTLSEDAYYQNLNLCESLDGFTCSSSSMRRNGLKSAKAAALITIILAAVVALVFALWMLVSRNRKYMAEKHSMALSSSSAAEDFSYPWTFIPFQKLNFTIDNILESMKDENIIGKGCSGVVYKADMPNGELVAVKKLWKTKQDEEAVDSCAAEIQILGHIRHRNIVKLIGYCSNRSVKLLLYNYISNGNLQQLLQGNRNLDWETRYKIAVGTAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNTPNYHHAISRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAIESQVGDGLHIVEWVKKKMASFEPAITILDAKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWGKTSQPLIKQTSNLS 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40466704 40471072 + Maker00039392 Lcy10g1602 645113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1602 1084 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 865 1077 - -
Lcy10g1602 1084 SUPERFAMILY L domain-like 60 407 - -
Lcy10g1602 1084 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 657 1062 IPR050647 -
Lcy10g1602 1084 Pfam Leucine rich repeat 539 598 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 SMART LRR_typ_2 657 690 IPR003591 -
Lcy10g1602 1084 SMART LRR_typ_2 537 560 IPR003591 -
Lcy10g1602 1084 SMART LRR_typ_2 128 151 IPR003591 -
Lcy10g1602 1084 SMART LRR_typ_2 585 609 IPR003591 -
Lcy10g1602 1084 SMART LRR_typ_2 176 200 IPR003591 -
Lcy10g1602 1084 SMART LRR_typ_2 297 321 IPR003591 -
Lcy10g1602 1084 SMART LRR_typ_2 417 441 IPR003591 -
Lcy10g1602 1084 SMART LRR_typ_2 152 175 IPR003591 -
Lcy10g1602 1084 SMART LRR_typ_2 369 393 IPR003591 -
Lcy10g1602 1084 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 513 707 - -
Lcy10g1602 1084 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 33 196 - -
Lcy10g1602 1084 Gene3D Ribonuclease Inhibitor 289 385 IPR032675 -
Lcy10g1602 1084 Gene3D Ribonuclease Inhibitor 193 288 IPR032675 -
Lcy10g1602 1084 SMART serkin_6 787 1063 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1602 1084 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 443 512 - -
Lcy10g1602 1084 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 212 435 - -
Lcy10g1602 1084 Gene3D Phosphorylase Kinase; domain 1 750 864 - -
Lcy10g1602 1084 SUPERFAMILY Protein kinase-like (PK-like) 769 1060 IPR011009 -
Lcy10g1602 1084 FunFam Putative LRR receptor-like serine/threonine-protein kinase 772 864 - -
Lcy10g1602 1084 Gene3D Ribonuclease Inhibitor 386 482 IPR032675 -
Lcy10g1602 1084 Gene3D Ribonuclease Inhibitor 36 192 IPR032675 -
Lcy10g1602 1084 SUPERFAMILY L domain-like 386 698 - -
Lcy10g1602 1084 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Lcy10g1602 1084 Pfam Protein kinase domain 789 1056 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1602 1084 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 Pfam Leucine Rich Repeat 491 511 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 Pfam Leucine Rich Repeat 178 200 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 Pfam Leucine Rich Repeat 371 393 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 Pfam Leucine Rich Repeat 659 675 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 Pfam Leucine Rich Repeat 516 537 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 Pfam Leucine Rich Repeat 615 634 IPR001611 GO:0005515(InterPro)
Lcy10g1602 1084 Gene3D Ribonuclease Inhibitor 579 704 IPR032675 -
Lcy10g1602 1084 Gene3D Ribonuclease Inhibitor 483 578 IPR032675 -
Lcy10g1602 1084 Gene3D Transferase(Phosphotransferase) domain 1 865 1074 - -
Lcy10g1602 1084 ProSiteProfiles Protein kinase domain profile. 787 1077 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1602 1084 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1602 1084 PRINTS Leucine-rich repeat signature 420 433 - -
Lcy10g1602 1084 PRINTS Leucine-rich repeat signature 585 598 - -
Lcy10g1602 1084 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1602 Lcy-Chr10:40466704 Lcy9g0919 Lcy-Chr9:31005023 4.22E-106 dispersed
Lcy2g0103 Lcy-Chr2:803317 Lcy10g1602 Lcy-Chr10:40466704 3.44E-56 dispersed
Lcy10g1602 Lcy-Chr10:40466704 Lcy13g0444 Lcy-Chr13:5209544 1.71E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65401 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1602 - - - 0.0