Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g1608 | ATGGCGGCTACAGTTCCGACACCGGTGACTGCCGCTCCAGTTCAAACTGCGGCGATTCCTCCTCCCGCTGGCTCTGTGGCCACTGGAGGTGGGTTTTTGAGTTCGTCATTGTATGTGGGCGATCTGGACCAGACTGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTCTCCATTAGGGTTTGCAGGGATCAGACACGCAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCACTCATCAGGATGGTTCGTTTTTCCGTTCTCTATCTCTTCTTTTCGTTCTTTATGTTTATTCTGTGTGTGTGCCTTCCAACGCTATGGAACACTTGAATTTCACTCCTATCAATGGGAAGCCTATCAGGATTATGATGTCTAATCGAGACCCTAGCAGCCGAAAAAGTGGTTATGCAAATGTTTTTATCAAAAATCTGGACACATCAATTGATAACAAGGCATTACATGATACATTTGCAACCTTTGGTACTGTTCTTTCTTGCAAAGTTGCCGTTGATGTCAATGGGCAATCCAAAGGCTATGGGTTTGTGCAATTTGAAAATGAGGAAGCTGCAGAAAGTGCAATAATAAGGTTGAATGGTATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTTATTCGACACCAGGAAAGGATTCGAGCTAATGGATCATTGTTTACAAATGTTTATGTGAAAAATTTACCGGAAACTACCACGGATGATGATCTAAAAAATCTTTTTACCACATATGGTGCCATTACAAGTGCAGTTGTCATGAGGGATTCAAATGGGAAGTCCAGATGTTTTGGTTTTGTGAACTTCCAAAACACTGACTCTGCTGCTGCTGCAGTTGAAAAGTTGAATGGCACCATCCTTGGTGATGACAAGGTTTTGTATGTAGGCAGGGCTCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGCAGATTTGAAAAATTACAAGGTGCTAATTTGTATATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTCATGCTTGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTAGCCTTTACTTCACCGGATGAAGCAACAAGAGCCTTAAATGAAATGAATGGAAAGATGAAAGGAAAGAAACCTCTGTATGTGGCTGTTGCCCAGCGCAAAGAAGAGAGAAAGGCTCGTTTGCAGGCACAATTTGCTCAAATCCGAGCAGCTGGTGGAATATCATCTTTGCCTTCAGGAATTCCAGGATTTCATCCAGGGGCTCCACGACTTGCACCTCAGCAGCTGTATTATGGTCAGGGAAACCCCGGGCTGGTGCCCCCACAGCCTGCTGGATACGGCTTCCAGCCTCAACTCATGACTGGAATGCGACCTGGTATGGGCCCGAACTTCATCATGCCTTACCAATTTCAGAGGCAAGGACAGCCTGGCCCACGCTCGGGGATGAGGCGGGGTGGGAATTCACAACCAGTTCAACAGCAGCAGGTAAAGTTACTGCTCCGTGGCTCTGGACAAGGATTTAGATACATGAACAATGCACGAAATGGATTAGAGCCGCCCGTCCTGCCCCAAGGTCTTGTAGGTCCGATGATGCCTCTAGCTTTTGATAGTTCTGGAGTGTCTAGCTCCCCCATTGACATCCAGCGATCAAGGACCGTGCCTTCTTCAACACTCGCTTCTGCATTAGCTTCCGCTACACCTGAAAATCAGCGCGTGATGCTTGGCGAGCAGCTGTATCCACTTGTGGAACGTCTCGAGCCAGGTCATGCAGCAAAGGTTACTGGAATGTTGCTGGAGATGGACCAACCGGAGGTGCTTCATCTCATCGAGTCACCGGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCCGAGCTCTCTGATCAGCTTGGTGCATTGGCTCTTAACAAGTGA | 2025 | 46.47 | MAATVPTPVTAAPVQTAAIPPPAGSVATGGGFLSSSLYVGDLDQTVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSTHQDGSFFRSLSLLFVLYVYSVCVPSNAMEHLNFTPINGKPIRIMMSNRDPSSRKSGYANVFIKNLDTSIDNKALHDTFATFGTVLSCKVAVDVNGQSKGYGFVQFENEEAAESAIIRLNGMLLNDKQVYVGHFIRHQERIRANGSLFTNVYVKNLPETTTDDDLKNLFTTYGAITSAVVMRDSNGKSRCFGFVNFQNTDSAAAAVEKLNGTILGDDKVLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFTSPDEATRALNEMNGKMKGKKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAPRLAPQQLYYGQGNPGLVPPQPAGYGFQPQLMTGMRPGMGPNFIMPYQFQRQGQPGPRSGMRRGGNSQPVQQQQVKLLLRGSGQGFRYMNNARNGLEPPVLPQGLVGPMMPLAFDSSGVSSSPIDIQRSRTVPSSTLASALASATPENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALALNK | 674 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 40491095 | 40495179 | - | Maker00039964 | Lcy10g1608 | 645119 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g1608 | 674 | Gene3D | - | 230 | 334 | IPR012677 | - | |
| Lcy10g1608 | 674 | SMART | rrm2_1 | 144 | 216 | IPR003954 | GO:0003676(InterPro) | |
| Lcy10g1608 | 674 | SMART | rrm2_1 | 338 | 410 | IPR003954 | GO:0003676(InterPro) | |
| Lcy10g1608 | 674 | SMART | rrm2_1 | 234 | 306 | IPR003954 | GO:0003676(InterPro) | |
| Lcy10g1608 | 674 | FunFam | Polyadenylate-binding protein | 225 | 319 | - | - | |
| Lcy10g1608 | 674 | Coils | Coil | 412 | 432 | - | - | |
| Lcy10g1608 | 674 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 582 | 659 | IPR002004 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | PANTHER | RNA BINDING PROTEIN | 233 | 501 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
| Lcy10g1608 | 674 | FunFam | Polyadenylate-binding protein | 320 | 425 | - | - | |
| Lcy10g1608 | 674 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 220 | IPR035979 | GO:0003676(InterPro) | |
| Lcy10g1608 | 674 | FunFam | Polyadenylate-binding protein | 578 | 660 | - | - | |
| Lcy10g1608 | 674 | FunFam | Polyadenylate-binding protein | 144 | 217 | - | - | |
| Lcy10g1608 | 674 | Coils | Coil | 306 | 326 | - | - | |
| Lcy10g1608 | 674 | CDD | RRM2_I_PABPs | 141 | 217 | IPR045305 | - | |
| Lcy10g1608 | 674 | SUPERFAMILY | RNA-binding domain, RBD | 233 | 418 | IPR035979 | GO:0003676(InterPro) | |
| Lcy10g1608 | 674 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 143 | 215 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | CDD | RRM4_I_PABPs | 336 | 414 | - | - | |
| Lcy10g1608 | 674 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 233 | 311 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | Gene3D | - | 335 | 434 | IPR012677 | - | |
| Lcy10g1608 | 674 | SUPERFAMILY | PABC (PABP) domain | 489 | 661 | IPR036053 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 357 | 369 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
| Lcy10g1608 | 674 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 342 | 357 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
| Lcy10g1608 | 674 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 233 | 248 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
| Lcy10g1608 | 674 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 324 | 341 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
| Lcy10g1608 | 674 | Gene3D | - | 144 | 217 | IPR012677 | - | |
| Lcy10g1608 | 674 | Gene3D | - | 578 | 659 | - | - | |
| Lcy10g1608 | 674 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 35 | 655 | IPR006515 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | SMART | rrm1_1 | 234 | 307 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | SMART | rrm1_1 | 144 | 216 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | SMART | rrm1_1 | 338 | 410 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | SMART | rrm1_1 | 36 | 104 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | Pfam | RNA recognition motif | 37 | 88 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | Pfam | RNA recognition motif | 145 | 213 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | Pfam | RNA recognition motif | 339 | 407 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | Pfam | RNA recognition motif | 235 | 302 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | MobiDBLite | consensus disorder prediction | 500 | 519 | - | - | |
| Lcy10g1608 | 674 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 35 | 133 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 337 | 414 | IPR000504 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | CDD | RRM3_I_PABPs | 232 | 312 | - | - | |
| Lcy10g1608 | 674 | Pfam | Poly-adenylate binding protein, unique domain | 589 | 654 | IPR002004 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | SMART | poly_2 | 594 | 657 | IPR002004 | GO:0003723(InterPro) | |
| Lcy10g1608 | 674 | Gene3D | - | 32 | 143 | IPR012677 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1608 | Lcy-Chr10:40491095 | Lcy6g0511 | Lcy-Chr6:4781282 | 1.28E-235 | dispersed | |
| Lcy10g1604 | Lcy-Chr10:40479328 | Lcy10g1608 | Lcy-Chr10:40491095 | 3.54E-07 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g1608 | K13126 | - | csv:101219081 | 1112.06 |