Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1630 ATGGAGAAGTGCTCTGTTTATTCCCTCCATTCCCTGTTGATCTTTCTCCTCATTTTGAGTCTCTTTGTTCCAATTAGTCTGTCTCTTCCGACCGAGACTCGAGCATTGCTTCTTTTCAAAGAGAATCTCAAAGACCCTACAGGTTTTCTTCATTCTTGGATTGATTCTCAATCCCCTTGTGGATTCTCCGGGGTTACCTGCGATCGGGTTTCCGGGAAAGTCGTAGAGATTTCCTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCCTCCATTTCTGTTCTGCAGAGTCTCACAACACTTTCCTTGGCCTCAAACCACATTTCTGGGGAGCTTCCCTACCAACTGATCAACTGTAGCAATCTTAGAGTATTGAATCTCACTGGCAATGAAATGGTTAGGAGGATTCCTGATCTTTCTCAGCTGAGAAAATTGGAGGTTCTAGATCTATCAATCAACTTCTTTTCTGGCCAATTCCCAATCTGGGTTGGAAATTTAACTGGATTGGTTTCTCTGGGACTTGGTGAAAATGAGTTTGAGGCTGGTGAAATACCAGAATCTATTGGAAATTTGAAGAACTTAACTTGGCTATATCTAGCAAATGCACATTTGAGTGGGGAAATTCCAGAGTCTCTCTTTGAATTGAAGGCATTAGAGACATTGGATCTTTCAAGGAACAAGATTTCTGGTAAACTCTCCAAGTCGATATCCAAGTTACAGAATCTGAATAAGCTTGAGCTTTTTGTTAACCATTTGACTGGAGAAATCCCACCAGAGATTTCAAACCTAACCCTTCTGCAAGAAATCGATATTTCGGCAAATAGTTTGAGTGGGAAGTTGCCTGAAGGGGTCGGGAACCTGAGGAATTTGGTGGTTTTTCAGTCGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGTTTTGGAAATTTGCAGAATCTTATTGCATTTTCAATCTATAGGAACAACTTTTCTGGGGAATTTCCAGTGAACTTCGGCAGATTTGCTCCGCTCAACAGCATCGACATATCCGAAAACCAATTTTCTGGGAATTTCCCCAAGTTCTTGTGTGAGAATAGGAAGTTGCAGTTCTTACTTGCTCTGGAAAATAGATTTTCAGGTGAGCTGCCACTTTCTCTAGCTGAGTGCAAATCACTGCAAAGGCTCAGAATCAATAATAATCAAATGTCTGGCATGATTCCAGATGGGGTATGGGCTCTTCCTAATGCAAAAATGATTGATTTTAGTGACAATGAATTCACTGGAGTTATATCCCCAGACATTGGTCTATCTACCAGCTTGAGCCAATTGGTTTTGCTAAACAATAAGTTCTCAGGGAAGTTTCCATCAGAGCTTGGCAAGTTGACAAATTTAGAGAGGCTTCACTTGAGTAATAATGACTTCAATGGAGAAATACCTTCTGAAATTGGTTTTCTCAGGCAACTTTCATCATTACATCTGGAAGTAAATTCTTTGAATGGATCAATCCCACAAGAGATTGGTGATTGTGAAAGACTTGTGGACATAAATTTTGCTCACAACTCTCTTAGTGGTAGCATTCCATCTTCATTTTCATTAATCAGCTCTTTGAACTCACTGAACCTCTCAAGCAACAAACTTACAGGTATGATCCCAGAATACTTGGAGAAAATGAAACTAAGTTCGATTGATTTGTCGGGAAATCAGCTGTTCGGACGAGTTCCTTCCAGTCTTCTGGCAATGAGTGGGGACAAAGCATTTTTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAAAGGATAAATACCAGCCTGATTACTTGTACTGGAAAGCATAGTCAGAAGGGGGTGCTTGAGGATAAACTTGTATTTTTCAGTATCATAGTCTCCATCTTGGTTTGTGTATTAGCAGGGTTAGTGTTGGTAAGTTGTAAATACTTGAAGCTCAGTCGGACTGGCTCAGAGAACAGCCAGGAAGGAGACCAACAAGGAGCTCCAAAATGGAAAATTGCATCATTCCATCAAGTGGAAATTGATGCAGATGAAATCAGCAGCTTTGAAGAAGACAATTTGATAGGGAGTGGAGGAACGGGAAAAGTTTATCGGTTGGATCTGAAGAAAAACGGCAGTACAGTGGCTGTTAAGCAGCTCTGGAAAGGAGCTGCAATGAAGGTTTTGGCAGCAGAAATGGAGATTCTGGGAAAGATAAGGCATAGAAATATCTTGAAGCTCTATGCCTGCTTAATGAGAGAAGGATCTAGTTATCTAGTTTTTGAATATATGACCAATGGCAACCTGTGTGAAGCACTCCAAAGACAGATCAAAGGTGCGCAGCCTGAATTGAACTGGAATCAAAGGTACAGAATTGCCTTGGGAGCAGCAAGGGGAATTGCTTACTTGCACCATGATTGTTCGCCACCTATAATTCATAGAGATATAAAGTCAACAAACATACTTCTAGATGGAGATTATGAACCAAAAATTGCTGATTTTGGGGTTGCAAAAGTTGCAGATCAGTTTCAAAGTGTTTCTGAGAACAGCTCTCTTGCTGGCACTCATGGTTATATTGCTCCTGAGCTAGCATATACTCCAAAAGTTTCAGAGAAGAGTGATGTGTACAGTTATGGTGTGGTGCTATTAGAATTGATTACTGGAAGGAGACCGATAGAAGATGAATATGGAGAAGGAAAAGACATTGTCTACTGGGTCTCAACACACCTCGATGACCGCAACAATGTCCTCAAGCTTCTAGACATCAAAGTTGCATCTGAAGTCGTCCAAAATGACATGATTAAAGTCCTGAAGATAGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTATTAGACGCCAATCCTTACTCTTCTTCAATGTCCCTGAACAACAGTTCAAATAAAAACATGAAGGATTTTGTTTAG 2934 40.73 MEKCSVYSLHSLLIFLLILSLFVPISLSLPTETRALLLFKENLKDPTGFLHSWIDSQSPCGFSGVTCDRVSGKVVEISLENKSLSGEISPSISVLQSLTTLSLASNHISGELPYQLINCSNLRVLNLTGNEMVRRIPDLSQLRKLEVLDLSINFFSGQFPIWVGNLTGLVSLGLGENEFEAGEIPESIGNLKNLTWLYLANAHLSGEIPESLFELKALETLDLSRNKISGKLSKSISKLQNLNKLELFVNHLTGEIPPEISNLTLLQEIDISANSLSGKLPEGVGNLRNLVVFQSYENNFSGKLPEGFGNLQNLIAFSIYRNNFSGEFPVNFGRFAPLNSIDISENQFSGNFPKFLCENRKLQFLLALENRFSGELPLSLAECKSLQRLRINNNQMSGMIPDGVWALPNAKMIDFSDNEFTGVISPDIGLSTSLSQLVLLNNKFSGKFPSELGKLTNLERLHLSNNDFNGEIPSEIGFLRQLSSLHLEVNSLNGSIPQEIGDCERLVDINFAHNSLSGSIPSSFSLISSLNSLNLSSNKLTGMIPEYLEKMKLSSIDLSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERINTSLITCTGKHSQKGVLEDKLVFFSIIVSILVCVLAGLVLVSCKYLKLSRTGSENSQEGDQQGAPKWKIASFHQVEIDADEISSFEEDNLIGSGGTGKVYRLDLKKNGSTVAVKQLWKGAAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFEYMTNGNLCEALQRQIKGAQPELNWNQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDGDYEPKIADFGVAKVADQFQSVSENSSLAGTHGYIAPELAYTPKVSEKSDVYSYGVVLLELITGRRPIEDEYGEGKDIVYWVSTHLDDRNNVLKLLDIKVASEVVQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLLDANPYSSSMSLNNSSNKNMKDFV 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40710733 40715463 + Maker00039179 Lcy10g1630 645141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1630 977 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Lcy10g1630 977 Pfam Leucine Rich Repeat 266 287 IPR001611 GO:0005515(InterPro)
Lcy10g1630 977 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515(InterPro)
Lcy10g1630 977 Pfam Leucine Rich Repeat 457 479 IPR001611 GO:0005515(InterPro)
Lcy10g1630 977 SUPERFAMILY L domain-like 184 423 - -
Lcy10g1630 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1630 977 ProSiteProfiles Protein kinase domain profile. 681 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1630 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 756 971 - -
Lcy10g1630 977 Gene3D Ribonuclease Inhibitor 322 595 IPR032675 -
Lcy10g1630 977 SUPERFAMILY L domain-like 359 572 - -
Lcy10g1630 977 Gene3D Transferase(Phosphotransferase) domain 1 756 975 - -
Lcy10g1630 977 FunFam Receptor-like protein kinase HSL1 293 595 - -
Lcy10g1630 977 Pfam Protein kinase domain 682 951 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1630 977 SMART serkin_6 681 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1630 977 SUPERFAMILY L domain-like 57 230 - -
Lcy10g1630 977 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515(InterPro)
Lcy10g1630 977 FunFam Leucine-rich receptor-like protein kinase family protein 671 755 - -
Lcy10g1630 977 Gene3D Ribonuclease Inhibitor 28 178 IPR032675 -
Lcy10g1630 977 ProSitePatterns Protein kinases ATP-binding region signature. 687 719 IPR017441 GO:0005524(InterPro)
Lcy10g1630 977 FunFam Leucine-rich repeat receptor protein kinase EMS1 208 292 - -
Lcy10g1630 977 Gene3D Ribonuclease Inhibitor 179 321 IPR032675 -
Lcy10g1630 977 SUPERFAMILY Protein kinase-like (PK-like) 676 953 IPR011009 -
Lcy10g1630 977 PRINTS Leucine-rich repeat signature 527 540 - -
Lcy10g1630 977 PRINTS Leucine-rich repeat signature 218 231 - -
Lcy10g1630 977 SMART LRR_typ_2 263 287 IPR003591 -
Lcy10g1630 977 SMART LRR_typ_2 527 551 IPR003591 -
Lcy10g1630 977 SMART LRR_typ_2 479 503 IPR003591 -
Lcy10g1630 977 SMART LRR_typ_2 95 119 IPR003591 -
Lcy10g1630 977 SMART LRR_typ_2 191 215 IPR003591 -
Lcy10g1630 977 SMART LRR_typ_2 455 477 IPR003591 -
Lcy10g1630 977 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Lcy10g1630 977 FunFam Probable inactive receptor kinase RLK902 29 183 - -
Lcy10g1630 977 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 329 955 IPR051564 GO:0016020(PANTHER)
Lcy10g1630 977 Gene3D Phosphorylase Kinase; domain 1 650 755 - -
Lcy10g1630 977 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1630 Lcy-Chr10:40710733 Lcy9g1649 Lcy-Chr9:41629593 7.64E-80 dispersed
Lcy3g1473 Lcy-Chr3:41514168 Lcy10g1630 Lcy-Chr10:40710733 2.68E-45 dispersed
Lcy10g1630 Lcy-Chr10:40710733 Lcy13g1447 Lcy-Chr13:32970137 4.04E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65404 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1630 - - - 0.0