Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1638 ATGGGGATTCAAACTATGGGGTCTCAGGCCGGAGGTGATCCAAATGGCAAACAATCACAATTCCAGCCATTGGTTCGTCAAAACTCTCTATATAGTCTCACACTGGATGAGGTCCAAAATCAGTTGGGTGATCTAGGAAAACCATTAATCAGCATGAACCTCGATGAGCTTCTTAAAAATGTGTGGACTGCCGAGGCCAACACCGTTGGTAAGGACAATGAGGACAATACCGTCTTGGCCAATCAAACATCCTTACAACGTCAGGCTAGTCTTTCATTGAATGGTGCTCTGAGTAAAAAGACCGTTGATGAGGTGTGGAGAGACATTCAACAAAGCAAAAACAGTGAGGAGAAGAAGTCTCGTGATCGGCAACCTACCTTGGGAGAGATGACACTGGAAGATTTTCTGGTGAAAGCAGGGGTGGTTGCTGAGACGTCGTCAAATAAAAAAGGCTCTGGTCCTATTGTTGAAATTGATGCAAATATCTCACCCCAGTTTCCCCAACAAGGGCAGTGGATGCAGTATCCCCAACCTCAATATCAGCAACAAGCAGCAATGATGGGGGTTTACATGTCAGGCCAGCCTATTCCCCAGCCACTGCATGTGGGAGCTGGTGCTGTAATGGATGTTCCATATGTAGACAACCAGTTGGCATTGCCAACACCATTGATGGGAGCTTTATCTGACACACAGACATCTGGGAGGAAAAGGGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAGAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGTGCGAGAAAGCAGGCTTATACCAACGAACTGGAGAACAAAGTTTCACGTTTGGAAGAGGAAAACGAAAGGCTCAGGAAACGGAAGTTAAATGCTCTACATGAGGCCACTTGTGCATATCGAGAGCGAGAGTGGGAATCGGGCAGTGAGAACTGA 951 47.0 MGIQTMGSQAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANTVGKDNEDNTVLANQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKNSEEKKSRDRQPTLGEMTLEDFLVKAGVVAETSSNKKGSGPIVEIDANISPQFPQQGQWMQYPQPQYQQQAAMMGVYMSGQPIPQPLHVGAGAVMDVPYVDNQLALPTPLMGALSDTQTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKLNALHEATCAYREREWESGSEN 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40789776 40793276 - Maker00039250 Lcy10g1638 645149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1638 316 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 296 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Lcy10g1638 316 SUPERFAMILY Leucine zipper domain 250 294 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1638 316 SMART brlzneu 246 310 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1638 316 Pfam bZIP transcription factor 250 293 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1638 316 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 293 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1638 316 MobiDBLite consensus disorder prediction 1 20 - -
Lcy10g1638 316 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 248 301 - -
Lcy10g1638 316 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1638 316 Gene3D - 248 304 - -
Lcy10g1638 316 CDD bZIP_plant_BZIP46 250 304 - -
Lcy10g1638 316 Coils Coil 266 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1638 Lcy-Chr10:40789776 Lcy2g1090 Lcy-Chr2:10771156 3.59E-65 dispersed
Lcy10g1638 Lcy-Chr10:40789776 Lcy5g0405 Lcy-Chr5:4275276 1.85E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19012 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1638 K14432 - csv:101213915 510.375