Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g1643 | ATGGATTCTACAACAACCCCAAATGAAAACTCGGCGAATATCGAATTCGCTCGCGGCTCTCCCTCGGGGCCAAGTCAATCGTCAGTGCAATCGAAGCCCTCGATTCCGGAAGTGGGTTCTAATGGTTCTGGATCGAAACCCGTGATTCAAGGGTCTCGAGATGCCGGTTCCAGTTTCCAGAACGAGATTGACGAGGAAGATGTGAGGTTGATTTACATCGATGATCCTGAAAAGACGAACGAGAATTCTGAGTTCGCTATAAATTTGATTTGTACTGGCAAGTATACGATTCTAAATTTTCTGCCCAGGAATCTGTTTGAACAATTTCATAGAATTGCTTATGTTTATTTCCTTGTTGTTTCGGTTCTTAATCAACTCCCCCAGATTTCCGTTTTTGGTTGGGGAGTCTCCATTTTGCCTCTAGCTTCTGTGCTGCTGGTTACAGCAGTTAAAGATGCATATGAGGATTGGAGAAGGCATCGTTCTGATGAGATTGAGAACAACCGGTTAGCTTTAGTTTTGGTGAATGGTGAGTTTCAATCGAAGAAATGGAAGGATATTAGAGTTGGTGAAATAATTAAAATTGGTGCAAATGAGCCTATTCCTTGTGATATGATGCTTCTCTCTACCAGTGATTCGACGGGGGTTGCGTATATGCAGACTCTGAATTTGGATGGGGAATCGAATTTGAAAACGAGGTATGCAAGGCAAGAAACAATGTCGAAAATGTCTGAAAAGGAAAAGATTGCTGGATTGATTAAATGTGGATATCCAAATAGGAAAATCTATGAATGCTTTATTGATTTGGAGATTGATGGGAAGCGTCTATCCCTTACACATTCAAGCATGGTTCTTCGTGGATGTGAGCTCAAGAATACAAGCTGGGCTGTTGGTGTTGCTGTATATGCTGGCCGGGAGACCAAAGCTATGCTTAACAGTTTTGTTGCTCCATTGAAAAGAAGCCGACTTGAGACCCGGAAGGACACAGAGATTATGATACTCTCTTTGTTTCTTATTGCTTTGTGTACAGTCGTTTGTGTTTTTGCTGCTGTTTGGTTCATCAGAAATGGGGAAGATTTGGACATTTTACCTTATTTCAGAAAGAAGGATTTCTCAAAACAACCACCTGAACCTTATAATTATTATGGCTGGGGATTGGATGCATTTTTTGTTTTCCTCATGTCAGTCATTTTTTTTCAGAGCATGATCCCCATTTCACTGTACATTTCAATGGAGGTTGTCCGCATTGCCCAGGCTTATTTCATGATTCGAGAATCCCAAATGTATGATGAAATTTCAAATTCAAGATTTCTGTGTCAGGCTTTGAACATAAATGAGGATTTAGGACAAATTAGGCATGTGTTTTTGGACAAAACAGGTACCCTTACTGAGAATAAGATGGAATTTCGATGCGCAAGCATTTGGGGAATCGATTATGGAGGCGAAAGAATCAATTCCTCTGACAACCAAGTTGGATTCTCTGTTCAGGTGGATGGAAAGGTTTTGAGACCAAAAGTGGCCGTCAATACCAATTCTGAGCTTCTGCAGTTATTAAAAATGCAGTTAATTGCCTACGAAGGGGAGTCTCCAGATGAACAGGCATTGGCTTATGCTGCTACAACATATGGTTTTACGCTAATTGAACGAGCTTCTGGCCATTTAGTTATTGACATACATGGTGAAAAGCAAAGGTATAATGTTTTGGGGATGCATGAGTTTGATAGTGACAGGAAGCGGATGTCGATGGTACTGGGGTGCCCTGACATGACCTTCAAAGTATTTGTAAAAGGTGCTGATAGCACCATGTTCAAGGTGATAGGTGAAACTCTGAACATGGATATTATTCAAGCGACTAAAGCTCATCTTCATTCGTACTCCTCAAAAGGTCTCAGGACACTAGTTATTGGGATGAAAGAACTTAGTCCTTCCAACTTCGAGAAATGGCACTTGATGTTTGAGGAAGCAACCACTGCTCGGGGTGGCAGGGCTACTCTGCTTCGCAAGGTTGCCAACAGCATAGAAAACAATCTATGCATATTGGGTGCCTTAGGCATCAAAGATAAGTTGCAAAAAGGTGTGCCAGAAGCCATGGAATCTTTAAGAACGGCAGGAATTAAAGTATGGGTTCTGACTGGGGACAAGCAAGAAACTGTCGTATCAATTGGTTACTCCTCGAGGCTCTTAACAAACAAGATGGCTCAACTTATAATTAACAGCGACTCAGCAGAATCATGCAGAACGAGTTTAGAAAATGCAATAATCATGTTAAAGAAGCATGCCAGTATGTTAGGTGTTACACTGGACAGTGGAAAAGGCATCGAAGCTGTAACACCTTCGGTTGCATTGATCATTGATGGTGCTAGCTTCGTATATATTCTCGAAGGTGAACTTGAAGAACAGTTTTTCGAACTAGCTTCTATCTGTACGGTTGTGTTATGTTCTCGGGTTGCTCCATTGCAGAAAGCTGCGATTGTTGCTCTTGTTAAGAGAAGGACCTCTGATGTGACACTTGCCTTTGGTGATGGTGCGAATGATGTGGGAATGATCCAAATGGCAGACGTGGGCATTGGTCTCAGTGGTTCAGAGGGTCAACAAGCTGTTAAGGCATCAGATTTTGCCATGGGGCAATTTAGATTCTTGGTTCCTCTTCTATTGGTCCATGGACATTGGAATTACCAGCGGATGGGCTACATGATTCTGTGCAATTTCTACCGAAATGCAGTGTTTGTGCTTGTTTTATTTTGTTTTGCTATTTTCTTCATCCCCCTCCTTGCATACTGGGCTACCACCATTGATGCTTCGAGCCTTGGTGATCTCTGGCTACTTGCACTGGTCATCGTTGTCAACTTGCACTTGGCGATGGATGTCGTTCGATGGCATTCCATCACCCATGCTGTGATCTGGGGATCCACTCTCGCAACTGTTATTTGTGTCGTTATCCTTGATTCGTTAGTGTCACTCCCTGGTTATTGA | 2973 | 42.35 | MDSTTTPNENSANIEFARGSPSGPSQSSVQSKPSIPEVGSNGSGSKPVIQGSRDAGSSFQNEIDEEDVRLIYIDDPEKTNENSEFAINLICTGKYTILNFLPRNLFEQFHRIAYVYFLVVSVLNQLPQISVFGWGVSILPLASVLLVTAVKDAYEDWRRHRSDEIENNRLALVLVNGEFQSKKWKDIRVGEIIKIGANEPIPCDMMLLSTSDSTGVAYMQTLNLDGESNLKTRYARQETMSKMSEKEKIAGLIKCGYPNRKIYECFIDLEIDGKRLSLTHSSMVLRGCELKNTSWAVGVAVYAGRETKAMLNSFVAPLKRSRLETRKDTEIMILSLFLIALCTVVCVFAAVWFIRNGEDLDILPYFRKKDFSKQPPEPYNYYGWGLDAFFVFLMSVIFFQSMIPISLYISMEVVRIAQAYFMIRESQMYDEISNSRFLCQALNINEDLGQIRHVFLDKTGTLTENKMEFRCASIWGIDYGGERINSSDNQVGFSVQVDGKVLRPKVAVNTNSELLQLLKMQLIAYEGESPDEQALAYAATTYGFTLIERASGHLVIDIHGEKQRYNVLGMHEFDSDRKRMSMVLGCPDMTFKVFVKGADSTMFKVIGETLNMDIIQATKAHLHSYSSKGLRTLVIGMKELSPSNFEKWHLMFEEATTARGGRATLLRKVANSIENNLCILGALGIKDKLQKGVPEAMESLRTAGIKVWVLTGDKQETVVSIGYSSRLLTNKMAQLIINSDSAESCRTSLENAIIMLKKHASMLGVTLDSGKGIEAVTPSVALIIDGASFVYILEGELEEQFFELASICTVVLCSRVAPLQKAAIVALVKRRTSDVTLAFGDGANDVGMIQMADVGIGLSGSEGQQAVKASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILCNFYRNAVFVLVLFCFAIFFIPLLAYWATTIDASSLGDLWLLALVIVVNLHLAMDVVRWHSITHAVIWGSTLATVICVVILDSLVSLPGY | 990 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 40829335 | 40834321 | + | Maker00039551 | Lcy10g1643 | 645154 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g1643 | 990 | SFLD | Haloacid Dehalogenase | 438 | 890 | - | - | |
| Lcy10g1643 | 990 | FunFam | Phospholipid-transporting ATPase | 143 | 312 | - | - | |
| Lcy10g1643 | 990 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 61 | 919 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
| Lcy10g1643 | 990 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 867 | 919 | IPR032630 | - | |
| Lcy10g1643 | 990 | Pfam | E1-E2 ATPase | 171 | 357 | - | - | |
| Lcy10g1643 | 990 | Gene3D | - | 519 | 679 | IPR023299 | GO:0000166(InterPro) | |
| Lcy10g1643 | 990 | SFLD | p-type atpase | 438 | 890 | IPR044492 | - | |
| Lcy10g1643 | 990 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 461 | 693 | IPR023299 | GO:0000166(InterPro) | |
| Lcy10g1643 | 990 | Pfam | Cation transport ATPase (P-type) | 528 | 603 | - | - | |
| Lcy10g1643 | 990 | SUPERFAMILY | HAD-like | 442 | 880 | IPR036412 | - | |
| Lcy10g1643 | 990 | ProSitePatterns | Hypothetical cof family signature 2. | 839 | 861 | - | - | |
| Lcy10g1643 | 990 | NCBIfam | HAD-IC family P-type ATPase | 808 | 919 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy10g1643 | 990 | SUPERFAMILY | Calcium ATPase, transduction domain A | 168 | 309 | IPR008250 | - | |
| Lcy10g1643 | 990 | Gene3D | - | 680 | 879 | IPR023214 | - | |
| Lcy10g1643 | 990 | PRINTS | P-type cation-transporting ATPase superfamily signature | 839 | 858 | - | - | |
| Lcy10g1643 | 990 | PRINTS | P-type cation-transporting ATPase superfamily signature | 455 | 469 | - | - | |
| Lcy10g1643 | 990 | FunFam | Phospholipid-transporting ATPase | 680 | 879 | - | - | |
| Lcy10g1643 | 990 | Gene3D | - | 143 | 312 | - | - | |
| Lcy10g1643 | 990 | Pfam | Phospholipid-translocating ATPase N-terminal | 71 | 137 | IPR032631 | - | |
| Lcy10g1643 | 990 | FunFam | Phospholipid-transporting ATPase | 524 | 657 | - | - | |
| Lcy10g1643 | 990 | NCBIfam | phospholipid-translocating P-type ATPase | 85 | 489 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
| Lcy10g1643 | 990 | NCBIfam | phospholipid-translocating P-type ATPase | 522 | 919 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
| Lcy10g1643 | 990 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Lcy10g1643 | 990 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 84 | 926 | IPR023298 | - | |
| Lcy10g1643 | 990 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 457 | 463 | IPR018303 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1643 | Lcy-Chr10:40829335 | Lcy10g1646 | Lcy-Chr10:40884601 | 0 | dispersed | |
| Lcy10g1643 | Lcy-Chr10:40829335 | Lcy10g1644 | Lcy-Chr10:40841248 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g1643 | K14802 | - | csv:101212953 | 1356.27 |