Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1646 ATGGCGTCAGAGCGGCCGCTTTTGATTATATCTCCAAGAACACCCAAAACCATCTCTCACGATCTACAGAAACCGGAGCCGAACCGACCTGGACTGTTCTTCGCCATGGATTCTCGAAGCCCTATTGAGAACTCGGCGAGTACCGAACTGGGTCACCGCTCTTTCTCGCGGCGAAGTCAATCGTCGCTACAATCGAAGTCCTCAATTCGTGAAGTGGGTTCAAGTGATTTTGGATCGAGGCCTGTTCGTCATGGCTCTCGAGGTGCTGATTCTGAAGCACTGAGCATATCCCAGAAGGAGATCAGTGACGAAGATGCGAGGTTGGTTTACATCGACGATCCTGAAAAGACAAACGAGAAGTTTGAATTCGCTAGAAATTCGATTCGCACTGGCAAGTATTCGATTCTAACTTTTCTGCCCAGGAATCTGTTTGAACAGTTTCATAGAATTGCTTATATATATTTCCTTGTTATTGCGGTTCTTAATCAACTTCCCCAGCTTGCCGTTTTTGGTCGGACAGTCTCCATTTTGCCTTTAGCTTTTGTGCTGCTAGTTACTGCAGTTAAAGATGCTTATGAGGATTGGAGAAGGCATCGTTCTGATAAAATTGAGAACAATAGATTAGCTTCAGTTTTGGTAGATGGTCAGTTTCAACAGAAGAAATGGAAGGATATTAGAGTTGGTGAGATAATTAAAATTGGTGCTAATGACACTATTCCTTGTGATATGGTGCTTCTCTCTACCAGTGATTCGACGGGGGTTGCGTATGTTCAGACTCTGAATTTGGATGGGGAATCGAATTTGAAAACGAGGTATGCGAAACAAGAGACGATGTCGAAAATGCCCGACAAGGAGAAGATTGTTGGGTTGATTAAATGTGAGAAACCCAATAGGAATATCTATGGATTTCATGCTAATATGGAGATTGATGGGAAACGTCTTTCTCTTGGACCTCCAAACATAGTTCTTCGTGGCTGTGAGCTCAAGAATACTAGCTGGGCTGTTGGTGTTGCTGTATATGCTGGCCGTGAGACCAAAGCCATGCTCAACAGTTCTGGAGCTCCGTCGAAAAGAAGTCGACTCGAGACTCGCATGAATGTGGAGATTATTATGCTCTCTTTCTTTCTCATTGCTCTGTGTTTAGTTGTTTGTGTTTTGGCTGCTATTTGGTTCATCAGAAATAAGGAAGATTTGGACACTTTACCTTATTTCAGAAATAAAGATTTCTCAGTAGACCCACCTGACACCTATAATTACTATGGATGGGGATTGGAGGCGTTTTTTGTATTCCTCATGTCAGTCATTGTGTTTCAGATCATGATCCCTATTTCACTTTACATTTCAATGGAGCTTGTTCGTGTCGGCCAGGCTTATTTCATGATCCGAGACGCCCAAATGTATGATGAAACATCAAATTCAAGATTTCAGTGCCGTGCTTTGAACATAAATGAGGATTTAGGACAAATAAAGTATGTGTTTTCAGATAAAACGGGTACCCTTACCGAGAATAAGATGGAATTTCGATGTGCAAGCATCTGGGGGGCCGATTATGGAGGAGAAAATACGGATCCCCTGGACGAGCAGATTGGATACTCTGTTAGAGTGAATGGAAAAGTTTTGAAACCGAAATTGGCTGTGAAAACCGATCCCGAGCTTCTACAGTTATCGGAAAGTGGAAATCGCACCAGGGATGGAAGATACATTCATGATTTCTTCCTCGCATTAGCTGCTTGCAATACCATCGTTCCTCTCATTACCGAAACTTCTGATCCTTCAGTGCAATTAATTGACTACCAAGGGGAGTCTCCAGATGAACAAGCATTGGTTTATGCTGCTGCGGCTTATGGTTTTATGCTAATAGAACGAACTTCTGGGCATATAGTTATTGACGTACATGGTGAAAAACAAAGGTACAATGTTTTGGGAATGCACGAGTTTGATAGTGATAGGAAGCGAATGTCGGTGATATTGGGGTGTCCTGATATGACCTTTAAAGTATTTGTAAAGGGTGCTGATAACTCCATGTTCAAGGTGATGGGTGAAAATCTGAACATGAATATCGTTCAAGTGACTAAAGCTCATCTTCATTCATACTCATCAAAGGGTCTCAGAACACTGGTTATTGGGATTAAAGAACTCAGTTCTTCTGACTTTGATAAATGGCACTTGATGTTTGAGGAAGCAAGCACCGCTTTGATCGGTAGGGCTGCTAAGCTTCGCAAGGTTGCCAGCAGCATAGAAAAGAATCTGCTCATATTGGGTGCTTCAGGCATTGAAGATAAGTTACAAAAAGGTGTGCCAGAAGCCATAGAAGCTTTAAGAATGGCAGGAATTAAAGTATGGGTTTTGACTGGGGACAAGCAAGAAACTGCCATATCGATAGGTTACTCCTCAAAGCTCTTGACAAACAAGATGACCCAAATTATAATTAACAGCAACTCGGTAGAATCGTGCAAAAGGAGTTTAGAAGATGCAATAATGATGTCGAAGAAGCTTGCTGTTGCCTCAAGGGTTACACTGGATGATGAAGAAAGCACTGAAGTTGTAACGACTTCGATTGCGTTGATCATTGATGGTAGTAGCCTCGTTCATATTCTCGACAGTAAACTCGAAGAACTGCTTTTCCAACTATCTGGTAACTGTTCGGTGGTGTTATGTTGTCGGGTCGCCCCATTGCAAAAAGCTGGAATCGTTGCTCTTGTCAAAAGAAGGACTTCTGACATGACACTTGCCATTGGTGATGGTGCAAATGATGTGTCAATGATCCAAAAGGCGGATGTAGGTGTTGGTATCAGTGGTCTAGAGGGTCGACAAGCTGTCATGGCGTCGGATTTTGCCATGGGGCAATTTAGATTCTTGGTTCCTCTTTTGTTGGTCCATGGACATTGGAATTACCAGCGGATGGGCTACATGATTTTGTACAACTTTTACAGAAATGCAGTTTTTGTGCTTGTTTTATTTTGGTATGTGCTCTTTACCGGTTTCTCGTTGACGACGGCGATCAACCAATGGAGCAGTGTGCTCTACTCTATAATCTATACTTGTTTGCCCACAATTGTTGTTGGAATTCTTGACAAGGACTTGGGTAGAAGAACTCTTCTTAGCTACCCTCAGCTCTATGGGGCTGGCCACAGACAAGAGGGCTACAACTCTAGATTGTTTTGGTTAACAATGATTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCCTCCTTGCATACTGGGGTACCACCGTCGACATTTCGGGCCTCGGAGATCTCTGGCTACTTGCTGCAGTCATCGTCGTCAACTTGCACTTGGCAATGGATGTGTTTCGATGGTATACCGTCACCCATGCTGTGATCTGGGGATCCACTCTCGCAACTGTCATTTGCGTCATTGTTCTTGATTCGATAGTGTCGCTTCCCGGTTACTGTCCATGTGACATCCAGATAGCAAGAGAGGCTGAGAGATTTGGAAGGACAAGAGAGCTGGGAGTTGTACAAACAGAGATGATCCCAGTCCTCAACAATCCTTCACAA 3528 43.34 MASERPLLIISPRTPKTISHDLQKPEPNRPGLFFAMDSRSPIENSASTELGHRSFSRRSQSSLQSKSSIREVGSSDFGSRPVRHGSRGADSEALSISQKEISDEDARLVYIDDPEKTNEKFEFARNSIRTGKYSILTFLPRNLFEQFHRIAYIYFLVIAVLNQLPQLAVFGRTVSILPLAFVLLVTAVKDAYEDWRRHRSDKIENNRLASVLVDGQFQQKKWKDIRVGEIIKIGANDTIPCDMVLLSTSDSTGVAYVQTLNLDGESNLKTRYAKQETMSKMPDKEKIVGLIKCEKPNRNIYGFHANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVAVYAGRETKAMLNSSGAPSKRSRLETRMNVEIIMLSFFLIALCLVVCVLAAIWFIRNKEDLDTLPYFRNKDFSVDPPDTYNYYGWGLEAFFVFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDAQMYDETSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGADYGGENTDPLDEQIGYSVRVNGKVLKPKLAVKTDPELLQLSESGNRTRDGRYIHDFFLALAACNTIVPLITETSDPSVQLIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDVHGEKQRYNVLGMHEFDSDRKRMSVILGCPDMTFKVFVKGADNSMFKVMGENLNMNIVQVTKAHLHSYSSKGLRTLVIGIKELSSSDFDKWHLMFEEASTALIGRAAKLRKVASSIEKNLLILGASGIEDKLQKGVPEAIEALRMAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSVESCKRSLEDAIMMSKKLAVASRVTLDDEESTEVVTTSIALIIDGSSLVHILDSKLEELLFQLSGNCSVVLCCRVAPLQKAGIVALVKRRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTGFSLTTAINQWSSVLYSIIYTCLPTIVVGILDKDLGRRTLLSYPQLYGAGHRQEGYNSRLFWLTMIDTVWQSIAIFFIPLLAYWGTTVDISGLGDLWLLAAVIVVNLHLAMDVFRWYTVTHAVIWGSTLATVICVIVLDSIVSLPGYCPCDIQIAREAERFGRTRELGVVQTEMIPVLNNPSQ 1176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40884601 40888956 + Maker00039205 Lcy10g1646 645157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1646 1176 MobiDBLite consensus disorder prediction 40 74 - -
Lcy10g1646 1176 ProSitePatterns E1-E2 ATPases phosphorylation site. 495 501 IPR018303 -
Lcy10g1646 1176 FunFam Phospholipid-transporting ATPase 181 350 - -
Lcy10g1646 1176 Pfam E1-E2 ATPase 209 449 - -
Lcy10g1646 1176 PRINTS P-type cation-transporting ATPase superfamily signature 912 931 - -
Lcy10g1646 1176 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
Lcy10g1646 1176 Pfam Cation transport ATPase (P-type) 601 677 - -
Lcy10g1646 1176 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 97 1135 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lcy10g1646 1176 SUPERFAMILY Calcium ATPase, transmembrane domain M 122 1130 IPR023298 -
Lcy10g1646 1176 FunFam Phospholipid-transporting ATPase 597 730 - -
Lcy10g1646 1176 NCBIfam phospholipid-translocating P-type ATPase 123 1136 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lcy10g1646 1176 NCBIfam HAD-IC family P-type ATPase 883 996 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1646 1176 NCBIfam HAD-IC family P-type ATPase 174 276 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1646 1176 NCBIfam HAD-IC family P-type ATPase 425 514 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1646 1176 Pfam Phospholipid-translocating P-type ATPase C-terminal 940 1136 IPR032630 -
Lcy10g1646 1176 Gene3D - 596 727 IPR023299 GO:0000166(InterPro)
Lcy10g1646 1176 Gene3D - 749 952 IPR023214 -
Lcy10g1646 1176 FunFam Phospholipid-transporting ATPase 752 952 - -
Lcy10g1646 1176 SFLD p-type atpase 477 963 IPR044492 -
Lcy10g1646 1176 SUPERFAMILY HAD-like 480 953 IPR036412 -
Lcy10g1646 1176 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 766 IPR023299 GO:0000166(InterPro)
Lcy10g1646 1176 MobiDBLite consensus disorder prediction 1 96 - -
Lcy10g1646 1176 SFLD C1.7: P-type atpase like 477 963 - -
Lcy10g1646 1176 Gene3D - 178 350 - -
Lcy10g1646 1176 Pfam Phospholipid-translocating ATPase N-terminal 109 176 IPR032631 -
Lcy10g1646 1176 CDD P-type_ATPase_APLT_Dnf-like 125 1072 - -
Lcy10g1646 1176 SUPERFAMILY Calcium ATPase, transduction domain A 206 347 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1643 Lcy-Chr10:40829335 Lcy10g1646 Lcy-Chr10:40884601 0 dispersed
Lcy10g1646 Lcy-Chr10:40884601 Lcy1g1623 Lcy-Chr1:16568295 0 dispersed
Lcy10g1644 Lcy-Chr10:40841248 Lcy10g1646 Lcy-Chr10:40884601 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1646 K14802 - csv:101212953 2120.51