Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1696 ATGGAGGAGGAAGGGCTCTTCACTTTCCAAATGGGGGTTTTCTGGCAAGAAACCACAGCCCCTTTGGTTGTTCCTCTCTTGAAGCTCTCTGTGGCTGCTTGCTTGGGCATGTCCCTAATGCTCTTCTTTGAAAGAGTTTATATGGGCATTGTCATTCTCTTTCTTAAACTCTTTGGAAAAAAACCCCACAAAACTTACAAGTGGGAGCCCATTAAAGATGATCTTGAGCTTGCTCATTCTGCCTATCCCATGGTTTTGGTCCAAATCCCTATGTACAATGAGAGAGAGGTTTATCAATTGTCAATTGGAGCAGCATGTGGGCTTTCATGGCCATCTGATAGGATCATAATTCAAGTTCTCGATGATTCTACTGATCCTTCTATCAAGGATCTGGTGGAGTTAGAGTGCAAAAGATGGGCAAGCAAAGGCATAAACATAAAGTACGAGATCAGAGACAACAGAAATGGCTACAAAGCAGGGGCTCTAAAAGAGGGAATGAAGCACAATTACGTTAAACTCTGCGACTACGTCGCTATTTTCGATGCAGATTTCCAACCTGAGCCTGATTTTCTCTGGCGCACCATTCCATTTCTCACAAACAATCCTGAAATCGGCCTTGTTCAAGCTCGCTGGAAGTTCGTGAACTCAGATGAATGTTTGATGACGAGAATGCAAGAGATGTCATTGGATTACCATTTCACAGTGGAGCAAGAGGTCGGGTCTGCAACTTATGCGTTCTTTGGGTTCAATGGCACAGCAGGTGTTTGGCGAATTGCTGCACTGGATGAGGCTGGAGGATGGAAGGATCGGACCACTGTTGAAGATATGGATTTGGCTGTCCGAGCTAGCCTCAAAGGGTGGAAGTTCGTCTATGTTGGCGACCTCAAGGTGAAGAATGAATTGCCAAGTACCTTCAAAGCCTACCGATATCAGCAACACCGATGGTCTTGTGGCCCGGCTAACCTCTTCAAGAAGATGGTTGTGGAAATCATGAGGAACAAGGCAGGGTTTGAGTAG 1017 45.53 MEEEGLFTFQMGVFWQETTAPLVVPLLKLSVAACLGMSLMLFFERVYMGIVILFLKLFGKKPHKTYKWEPIKDDLELAHSAYPMVLVQIPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPSIKDLVELECKRWASKGINIKYEIRDNRNGYKAGALKEGMKHNYVKLCDYVAIFDADFQPEPDFLWRTIPFLTNNPEIGLVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSATYAFFGFNGTAGVWRIAALDEAGGWKDRTTVEDMDLAVRASLKGWKFVYVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFKKMVVEIMRNKAGFE 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41351633 41358584 - Maker00039428 Lcy10g1696 645207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1696 338 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 74 299 IPR029044 -
Lcy10g1696 338 SUPERFAMILY Nucleotide-diphospho-sugar transferases 83 327 IPR029044 -
Lcy10g1696 338 FunFam Glucomannan 4-beta-mannosyltransferase 9 74 302 - -
Lcy10g1696 338 CDD CESA_CaSu_A2 83 319 - -
Lcy10g1696 338 Pfam Glycosyl transferase family group 2 176 319 IPR001173 -
Lcy10g1696 338 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 10 334 - GO:0005794(PANTHER)|GO:0016757(PANTHER)|GO:0051753(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1696 Lcy-Chr10:41351633 Lcy1g1280 Lcy-Chr1:12160729 2.57E-211 dispersed
Lcy10g1696 Lcy-Chr10:41351633 Lcy5g0365 Lcy-Chr5:3678642 3.15E-179 wgd
Lcy10g1696 Lcy-Chr10:41351633 Lcy8g1966 Lcy-Chr8:45925236 1.48E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1696 K13680 - csv:101211547 637.491