Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1700 ATGGCAGCGCCAAAGCCTCGCACCACTCGCTCCAGGTCTCACAGGGAGGTTCCGGATTTCGAGAAGATGGACGGTGCTTACAGTTGGGACGCCCTCGAATGGACCAAGATTGAGCCCGTTCCGCGGTCGGTTTCGCGTGTGAACTTGGATTGCTTGCTTGAAGCCGAACAAGTGATTGCTGAGGGCTATGGTGTTGTTCTTGTAAATACTGATGAGGCGGGTACACTTTTTGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACCATGGATGTTATTGCCCTTGGCACTATACCACTGGCGACAATTGATAAATTCAACAAAGTAGTTGTGAAGACAAATTCTGTCTCTCGCCAATCTGAAAAGTCTACATCTAGACGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTTCGTCCAAGAACAAAACAGAGGCGTAAAGTATATGATGCATTATTGAAGTGTATGAAACCTGCAAGGATATGGGATCTATATGCATTCAAGTCCGGACCATCCAAGTACAGTAATACAGACCCGAAAGTTCGTTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCTACGTGCATCAATGAGTATGATTGAAGATGGATCATTTACATTGTCCAATGAATTGTGGAGAATAACTAACATCAATTTGAATTATACTCTGTGTCAGAGTTATCCATTTGCGTTGGTTGTTCCAAAACACATTAGTGATGAAGAAATGTTGCAGGCTTCTTCCTTTCGTGCTAGATGTCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGTACTGGAGCTGTTCTTGCCCGTTCTTCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTAATACTGATGAAAAGCTTGTTGCTGAGCTTTGCTCGCATCTTGGTGGTGTTCAAGGGTCATCCCGTAGGTGGTTGTCTGCCGACTTTGGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCTATGGGAGGTGGCTCGGAATCTTCATCAAATTATTTTCAATGTGAGATAGTTTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTTACTCGGCTCAGAGAGTACTTGGATACTCATGGTGCAAAATCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGCGGAGGTAATCTTAGTAGCATGTCTGCATCTGTATCGACTCTAGGAGATAGTGGCTGGTTAATCCATGTTCAAAGTGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAAAAGCAACAGTGCTAGTTCATTGTAGTGATGGTTGGGACAGAACATCACAACTAGTTTCACTTGCTAGCTTACTACTTGATCCTTATTATCGGACGTTCGCTGGATTTCAGGCACTAGTTGAAAAGGATTGGCTGGCATTTGGTCATCCTTTCTCAGATCGGTCTGGCACACCAACCATATCGGGAAGCGGTAACATGCCATATGAACTCTCTAGGCAGTCTTCAACTGGAAGTTTATCTCCTTCACCTATGCGTCAGCCATCAGGATCATTCACATCTCAAGCTTCTAGTCCTCCACATGCACAAACATCAAACAACTGTTCTCCCATCTTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCTTTTGAGTTCTCTTCAGCATTCCTGGTGGATCTGTTGGATGGTATGCTTTCCTGTCGCTTTGGGAACTTCTTGTGCAATTGTGAGAAGGAACGGCAGCAATGTGCAGTTTCTGAAGTTTGCGGCTGTTTATGGGCGTATTTAGCTGATTTACGAGCTTCGGAAGGAAGTTCACATGTGCATTATAACCTCTTCTACGATCCAACCAAACATGAAGGGCCTCTCTTACCTCCTGCAGCAGCTCTAGCTCCAACTCTTTGGCCACAGTTCCATCTTCGTTGGGCTTGTCCTAAGGAGTCCCAAGCTGGGGAACTTGAAGCAAGATGCAGGAGAATGGCTATAAAATTCTCTGAAATGCAGAAGGACAAAGAAATAGCCGAGAGAAAAGCCCAAGAGATGACAGCTGCCATGGAATCATTAAAAGCAGAGTTGCAAAACGAGAAACAATCAAGTATATCTGCTATGAATGTAGCAAAAAGTGCAAGCAAAGAATGTGAAGCCATAAAGAGAGCAATTCAGTCTCTAGGCTGCAAGGTTGAAGTCTCTAGTAATGGTTATTGTACTGTTGACATTGAGGGCGACCTGATAAAATCCAATCAGAAAATTCATCCTGCTTCAAGAAAGGTTTCACATCGTTCACTGCCTGTTAGTGGGGAGAATGATCTCCCCCTTTCTATCACAGTTACAGCAGATGATGTGCCAAGCAACCCTCTCGGTCACGTCTGTGAAGCTCTTTGCCCGTTGCGCACTCGGGACGGAGGGTGCCGGTGGCCCAATGCTGGTTGTGCTCGTTTGGGTAGCCAATTTATTGGACTGAAGGCAAATTTCGATGCATTTGATAAACTATCCCTATACGATGGTTATTTCAAGCCAGAGTGA 2586 44.12 MAAPKPRTTRSRSHREVPDFEKMDGAYSWDALEWTKIEPVPRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVIALGTIPLATIDKFNKVVVKTNSVSRQSEKSTSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLKCMKPARIWDLYAFKSGPSKYSNTDPKVRLLNEYFRLLGKGSLRASMSMIEDGSFTLSNELWRITNINLNYTLCQSYPFALVVPKHISDEEMLQASSFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAELCSHLGGVQGSSRRWLSADFGKLYIADARPRKNALANGAMGGGSESSSNYFQCEIVFFGIDNIHAMRESLTRLREYLDTHGAKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALEKATVLVHCSDGWDRTSQLVSLASLLLDPYYRTFAGFQALVEKDWLAFGHPFSDRSGTPTISGSGNMPYELSRQSSTGSLSPSPMRQPSGSFTSQASSPPHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDGMLSCRFGNFLCNCEKERQQCAVSEVCGCLWAYLADLRASEGSSHVHYNLFYDPTKHEGPLLPPAAALAPTLWPQFHLRWACPKESQAGELEARCRRMAIKFSEMQKDKEIAERKAQEMTAAMESLKAELQNEKQSSISAMNVAKSASKECEAIKRAIQSLGCKVEVSSNGYCTVDIEGDLIKSNQKIHPASRKVSHRSLPVSGENDLPLSITVTADDVPSNPLGHVCEALCPLRTRDGGCRWPNAGCARLGSQFIGLKANFDAFDKLSLYDGYFKPE 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41387018 41401306 + Maker00039628 Lcy10g1700 645211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1700 861 Pfam Myotubularin-like phosphatase domain 215 602 IPR010569 -
Lcy10g1700 861 ProSiteProfiles Myotubularin phosphatase domain. 198 660 IPR010569 -
Lcy10g1700 861 Coils Coil 685 719 - -
Lcy10g1700 861 SMART gram2001c 43 111 IPR004182 -
Lcy10g1700 861 CDD PTP-MTM-like 261 562 - -
Lcy10g1700 861 Gene3D - 63 162 IPR011993 -
Lcy10g1700 861 MobiDBLite consensus disorder prediction 498 545 - -
Lcy10g1700 861 ProSitePatterns Tyrosine specific protein phosphatases active site. 448 458 IPR016130 GO:0016311(InterPro)
Lcy10g1700 861 PANTHER MYOTUBULARIN-RELATED 50 778 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
Lcy10g1700 861 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 215 664 IPR029021 -
Lcy10g1700 861 SUPERFAMILY PH domain-like 51 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1700 K18081 - - csv:101204839 1572.76
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g616 . Blo13g00941 . . . . . Bma08g01169 . . . . . . . Cpe13g00776 . Bhi04g01282 . . . Hepe02g2902 . Lcy10g1700 . . . . . . . . . Cone11ag1023 Cone18ag0555 Lsi08g00665 . . . . . . Bda15g00402 . . . . . . Cmo15g00495 . Cma15g00486 . Car15g00447 . . . . . . . . . Cla08g00816 Cam08g1250 Cec08g0835 Cco08g0946 Clacu08g0953 . Cre08g0754 . . Chy03g00887 Cme03g01177
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy9g0745 . 3 101 Protein tyrosine phosphatase (PTP) family AT1G71860 74.7 2.1e-41 167.2
Lcy2g0017 . 132 859 Protein tyrosine phosphatase (PTP) family AT5G23720 63.0 5.3e-244 841.6
Lcy2g0016 . 370 542 Protein tyrosine phosphatase (PTP) family AT5G23720 72.6 4.4e-65 247.3
Lcy13g0243 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 8.6e-44 174.1
Lcy3g0013 . 87 226 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.4e-41 166.0
Lcy3g0025 . 378 513 Protein tyrosine phosphatase (PTP) family AT3G06110 58.8 1.5e-40 163.3
Lcy4g0737 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 4.7e-72 268.1
Lcy7g1054 . 34 273 Protein tyrosine phosphatase (PTP) family AT3G10940 68.1 1.9e-99 359.8
Lcy10g0212 . 124 628 Protein tyrosine phosphatase (PTP) family AT3G01510 64.8 3.8e-195 678.3
Lcy4g0731 . 33 242 Protein tyrosine phosphatase (PTP) family AT2G32960 63.1 4.7e-73 271.9
Lcy4g2209 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.2e-79 294.3
Lcy4g2209 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.0e-45 180.6
Lcy4g0731 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.7e-70 263.1
Lcy2g1461 . 8 228 Protein tyrosine phosphatase (PTP) family AT3G02800 60.2 3.3e-74 275.4
Lcy4g0731 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 6.8e-51 198.0
Lcy7g0844 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.3e-62 238.8
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy4g0225 . 104 685 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 1.8e-216 749.6
Lcy1g0966 . 31 634 Protein tyrosine phosphatase (PTP) family AT3G19420 60.1 2.9e-198 689.1
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy8g1980 . 64 269 Protein tyrosine phosphatase (PTP) family AT3G44620 59.0 3.9e-67 252.3
Lcy6g2209 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 2.3e-111 399.4
Lcy1g1532 . 1 402 Protein tyrosine phosphatase (PTP) family AT3G09100 57.4 1.9e-121 434.1
Lcy1g1532 . 5 402 Protein tyrosine phosphatase (PTP) family AT5G01290 53.9 3.8e-111 399.8
Lcy1g1532 . 86 294 Protein tyrosine phosphatase (PTP) family AT5G28210 64.9 4.3e-72 270.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 3 1 1 35