Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1700 ATGGCAGCGCCAAAGCCTCGCACCACTCGCTCCAGGTCTCACAGGGAGGTTCCGGATTTCGAGAAGATGGACGGTGCTTACAGTTGGGACGCCCTCGAATGGACCAAGATTGAGCCCGTTCCGCGGTCGGTTTCGCGTGTGAACTTGGATTGCTTGCTTGAAGCCGAACAAGTGATTGCTGAGGGCTATGGTGTTGTTCTTGTAAATACTGATGAGGCGGGTACACTTTTTGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACCATGGATGTTATTGCCCTTGGCACTATACCACTGGCGACAATTGATAAATTCAACAAAGTAGTTGTGAAGACAAATTCTGTCTCTCGCCAATCTGAAAAGTCTACATCTAGACGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTTCGTCCAAGAACAAAACAGAGGCGTAAAGTATATGATGCATTATTGAAGTGTATGAAACCTGCAAGGATATGGGATCTATATGCATTCAAGTCCGGACCATCCAAGTACAGTAATACAGACCCGAAAGTTCGTTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCTACGTGCATCAATGAGTATGATTGAAGATGGATCATTTACATTGTCCAATGAATTGTGGAGAATAACTAACATCAATTTGAATTATACTCTGTGTCAGAGTTATCCATTTGCGTTGGTTGTTCCAAAACACATTAGTGATGAAGAAATGTTGCAGGCTTCTTCCTTTCGTGCTAGATGTCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGTACTGGAGCTGTTCTTGCCCGTTCTTCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTAATACTGATGAAAAGCTTGTTGCTGAGCTTTGCTCGCATCTTGGTGGTGTTCAAGGGTCATCCCGTAGGTGGTTGTCTGCCGACTTTGGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCTATGGGAGGTGGCTCGGAATCTTCATCAAATTATTTTCAATGTGAGATAGTTTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTTACTCGGCTCAGAGAGTACTTGGATACTCATGGTGCAAAATCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGCGGAGGTAATCTTAGTAGCATGTCTGCATCTGTATCGACTCTAGGAGATAGTGGCTGGTTAATCCATGTTCAAAGTGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAAAAGCAACAGTGCTAGTTCATTGTAGTGATGGTTGGGACAGAACATCACAACTAGTTTCACTTGCTAGCTTACTACTTGATCCTTATTATCGGACGTTCGCTGGATTTCAGGCACTAGTTGAAAAGGATTGGCTGGCATTTGGTCATCCTTTCTCAGATCGGTCTGGCACACCAACCATATCGGGAAGCGGTAACATGCCATATGAACTCTCTAGGCAGTCTTCAACTGGAAGTTTATCTCCTTCACCTATGCGTCAGCCATCAGGATCATTCACATCTCAAGCTTCTAGTCCTCCACATGCACAAACATCAAACAACTGTTCTCCCATCTTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCTTTTGAGTTCTCTTCAGCATTCCTGGTGGATCTGTTGGATGGTATGCTTTCCTGTCGCTTTGGGAACTTCTTGTGCAATTGTGAGAAGGAACGGCAGCAATGTGCAGTTTCTGAAGTTTGCGGCTGTTTATGGGCGTATTTAGCTGATTTACGAGCTTCGGAAGGAAGTTCACATGTGCATTATAACCTCTTCTACGATCCAACCAAACATGAAGGGCCTCTCTTACCTCCTGCAGCAGCTCTAGCTCCAACTCTTTGGCCACAGTTCCATCTTCGTTGGGCTTGTCCTAAGGAGTCCCAAGCTGGGGAACTTGAAGCAAGATGCAGGAGAATGGCTATAAAATTCTCTGAAATGCAGAAGGACAAAGAAATAGCCGAGAGAAAAGCCCAAGAGATGACAGCTGCCATGGAATCATTAAAAGCAGAGTTGCAAAACGAGAAACAATCAAGTATATCTGCTATGAATGTAGCAAAAAGTGCAAGCAAAGAATGTGAAGCCATAAAGAGAGCAATTCAGTCTCTAGGCTGCAAGGTTGAAGTCTCTAGTAATGGTTATTGTACTGTTGACATTGAGGGCGACCTGATAAAATCCAATCAGAAAATTCATCCTGCTTCAAGAAAGGTTTCACATCGTTCACTGCCTGTTAGTGGGGAGAATGATCTCCCCCTTTCTATCACAGTTACAGCAGATGATGTGCCAAGCAACCCTCTCGGTCACGTCTGTGAAGCTCTTTGCCCGTTGCGCACTCGGGACGGAGGGTGCCGGTGGCCCAATGCTGGTTGTGCTCGTTTGGGTAGCCAATTTATTGGACTGAAGGCAAATTTCGATGCATTTGATAAACTATCCCTATACGATGGTTATTTCAAGCCAGAGTGA 2586 44.12 MAAPKPRTTRSRSHREVPDFEKMDGAYSWDALEWTKIEPVPRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVIALGTIPLATIDKFNKVVVKTNSVSRQSEKSTSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLKCMKPARIWDLYAFKSGPSKYSNTDPKVRLLNEYFRLLGKGSLRASMSMIEDGSFTLSNELWRITNINLNYTLCQSYPFALVVPKHISDEEMLQASSFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAELCSHLGGVQGSSRRWLSADFGKLYIADARPRKNALANGAMGGGSESSSNYFQCEIVFFGIDNIHAMRESLTRLREYLDTHGAKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALEKATVLVHCSDGWDRTSQLVSLASLLLDPYYRTFAGFQALVEKDWLAFGHPFSDRSGTPTISGSGNMPYELSRQSSTGSLSPSPMRQPSGSFTSQASSPPHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDGMLSCRFGNFLCNCEKERQQCAVSEVCGCLWAYLADLRASEGSSHVHYNLFYDPTKHEGPLLPPAAALAPTLWPQFHLRWACPKESQAGELEARCRRMAIKFSEMQKDKEIAERKAQEMTAAMESLKAELQNEKQSSISAMNVAKSASKECEAIKRAIQSLGCKVEVSSNGYCTVDIEGDLIKSNQKIHPASRKVSHRSLPVSGENDLPLSITVTADDVPSNPLGHVCEALCPLRTRDGGCRWPNAGCARLGSQFIGLKANFDAFDKLSLYDGYFKPE 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41387018 41401306 + Maker00039628 Lcy10g1700 645211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1700 861 Pfam Myotubularin-like phosphatase domain 215 602 IPR010569 -
Lcy10g1700 861 ProSiteProfiles Myotubularin phosphatase domain. 198 660 IPR010569 -
Lcy10g1700 861 Coils Coil 685 719 - -
Lcy10g1700 861 SMART gram2001c 43 111 IPR004182 -
Lcy10g1700 861 CDD PTP-MTM-like 261 562 - -
Lcy10g1700 861 Gene3D - 63 162 IPR011993 -
Lcy10g1700 861 MobiDBLite consensus disorder prediction 498 545 - -
Lcy10g1700 861 ProSitePatterns Tyrosine specific protein phosphatases active site. 448 458 IPR016130 GO:0016311(InterPro)
Lcy10g1700 861 PANTHER MYOTUBULARIN-RELATED 50 778 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
Lcy10g1700 861 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 215 664 IPR029021 -
Lcy10g1700 861 SUPERFAMILY PH domain-like 51 174 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1700 K18081 - csv:101204839 1572.76