Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1725 ATGTTTGCTACCACTGGCATTCTGTTCTTCATCTGGCTTTTGAGCTCCTCTCTGCCTCCTCTTGCTATGGCAGCTTTCAGTTTCAATGTCACTGTCCCTCATCTTCTTCAAGATCCTGAAACTGTTGCTTATGAAGTTCAGAGGAGTGTGAATGATTCCTTTTCCAGAAGGGAAATGCTGTCAATTCATTCGAAAGGCCAATCGAATTCCTGTCAAACTGGAAACCCTATTGATGATTGTTGGCGCTGCGACTCGAACTGGCAAGCGAATCGCCAGCGGCTCGCCGATTGCGGCATTGGATTTGGCCGAGACGCCATGGGAGGCAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGATTCCGACCCCGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTGGTTCAAGACGAACCTCTCTGGATCGTCTTCGCCGCCGACATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGACGGCCGAGGCGCCAATGTCCACATCACCGGCGGCGGTTGCATCACGCTGCAGTACATCTCGAACGTAATCATCCACAACATCAACATTCACCACTGTATCCCTACTGGCCACACCAACATCCGATCAAGTCCTACGCACGTCGGATACAGAGGAAAGTCCGACGGCGACGGAATCTCGATCTTCAGCTCGCGCAACATATGGATCGACCATTGCTCGCTCTCGTACTGTACCGACGGCTTAATCGACGCCATAATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGATGAGGTGATGCTGCTAGGGCACGACGACGGCTTCTCGCCGGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTGGTTCAGCGGATGCCGCGGTGCCGGCGGGGGTATATTCACGTCGTCAACAACGATTTCCGTTCGTGGGAGATGTACGCCATCGGCGGCAGCGGTGGTCCGACGATCAACAGCCAGGGAAATCGGTATATTGCTCCGGGGAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGAGACTGGTCGGAGTGGAACTGGAGAACGGAGGGGGACATAATGGTAAATGGAGCATTTTTCGTGCCGTCTGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTGTGGCGCCCAAATCCGCCGCTCTCGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGCGGGCCCAGGGAGAGTAGACAGAGCAACTCATATCCCAGAGACGAAAGCTCCTCTAGTTCGGGGTCAAGTGGCAGCGATGGCGGTGGTGACTACTTCGGGATGATATTCGGCGGGGGACGGGTGAACAGTGCACCATCTCCATCACTTTCAGTTGTTAACATGATCATTCTAACTCTGCTTACGATTTTAGTTCTGTACACGAACTCAAACTATGATGCTTTATTATCACTGACAACGTTATCATTGTAG 1497 52.71 MFATTGILFFIWLLSSSLPPLAMAAFSFNVTVPHLLQDPETVAYEVQRSVNDSFSRREMLSIHSKGQSNSCQTGNPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCIPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFSPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGGPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSVAPKSAALVDQLTLNAGVFGGPRESRQSNSYPRDESSSSSGSSGSDGGGDYFGMIFGGGRVNSAPSPSLSVVNMIILTLLTILVLYTNSNYDALLSLTTLSL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41619642 41625617 + Maker00039738 Lcy10g1725 645236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1725 498 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Lcy10g1725 498 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Lcy10g1725 498 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Lcy10g1725 498 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Lcy10g1725 498 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Lcy10g1725 498 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Lcy10g1725 498 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Lcy10g1725 498 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Lcy10g1725 498 MobiDBLite consensus disorder prediction 418 442 - -
Lcy10g1725 498 Pfam Pectate lyase 157 326 IPR002022 -
Lcy10g1725 498 PANTHER PECTATE LYASE 18-RELATED 27 415 IPR045032 GO:0030570(InterPro)
Lcy10g1725 498 Gene3D - 74 416 IPR012334 -
Lcy10g1725 498 FunFam Pectate lyase 74 416 - -
Lcy10g1725 498 SUPERFAMILY Pectin lyase-like 75 414 IPR011050 -
Lcy10g1725 498 MobiDBLite consensus disorder prediction 415 442 - -
Lcy10g1725 498 SMART amb_all 149 346 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1725 Lcy-Chr10:41619642 Lcy5g2168 Lcy-Chr5:44640219 2.75E-181 dispersed
Lcy1g1415 Lcy-Chr1:13707615 Lcy10g1725 Lcy-Chr10:41619642 3.74E-40 transposed
Lcy1g1324 Lcy-Chr1:12771791 Lcy10g1725 Lcy-Chr10:41619642 2.36E-220 wgd
Lcy10g1725 Lcy-Chr10:41619642 Lcy7g0622 Lcy-Chr7:5671541 4.10E-236 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1725 K01728 - csv:101207535 857.055