Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1749 ATGGGTGGTGTCGAAATACCCAAGTGGCTTAAAGGGTTGCCTTTGGCGCCGGAGTTTCGGCCGACGGATACCGAATTTGCCGACCCAATTGCCTACATATCTAAAATTGAGAAGGAAGCTAGTGCTTTTGGGATTTGTAAGATTATCCCTCCATTTCCCAAGCCTTCCAAGAAATATGTCATTAGTAACTTGAACAAATCTCTTTCGAGGTCTGCCGAGTTAAGTCGTGACCTAAATGTGTCAAATGTCAGTCCTCCATCCAAGTTGGGTTCCGCAGGTGGTGCTAACGAGGGTGAGTTTCGGGCAGTTTTTACGACTAGACACCAGGAGTTGGGTCAGAGTGTTAGGAAAACGAAAGGGGTAGTTCAGAATCCGCAGTTTGGAGTTCACAAGCAAGTATGGCAAAGTGGGGAGATTTATACATTGGAGCAATTCGAGTCTAAGTCAAAGGTTTTTGCTCGTAGTGTGTTAAGTGGGATTAAGGAGCCTTCTCCTCTGGTTGTAGAATCATTGTTTTGGAAGGCAGCTACTGATAAACCCATTTATGTGGAGTACGCAAATGATGTGCCGGGATCTGCTTTTGGAGAACCCGAGGGTAAATTTCGTTATTTCCATAGGAGGAGGAGGAAGAGAAACTATTATCACCGAAATAAAGAACAGTCTTCTGAAATTAAGAGTGAGGAAATGGAAACTTTGACGGATACCCTTTTACGGGATACTGGAGGCATTTCCACCAGGAATGATCGGAATACAAGTCCAGAGATGTGGAAGCCATCTACTTCCACGGTTTCCTTGGAGGATGCTTCACACTACTCGAGAGGAAAGAGTTCAGATTCTTGTATTAACATGGAAGGGACGGCAGGTTGGAGGCTTTCAAATAGCCCTTGGAACTTGCAAGTAATTGCACGGTCACCTGGATCACTTACGCGTTACATGCCGGATGACATTCCAGGTGTTACTTCTCCAATGGTTTACATTGGCATGTTGTTCAGTTGGTTTGCTTGGCATGTTGAAGATCATGAGCTGCATAGCATGAATTTTCTTCATGTAGGCTCTCCAAAAACCTGGTATTCCATTCCTGGAGATCATGCATTTGCTTTTGAGGAAGTAGTAAGAACTCAGGCTTATGGTGGCAGTGTTGACCACCTAGCTGCTCTTACATTACTGGGTGAAAAGACTACACTTCTATCTCCCGAGACAGTGATTGCATCAGGTATCCCTTGTTGCAGGTTAATCCAGAATCCAGGAGAATTTGTTGTCACCTTTCCAAGGGCTTACCACGTTGGGTTCAGTCATGGTTTTAACTGTGGTGAGGCTGCTAATTTTGGAACTCCACAATGGCTCAGCGTAGCCAAGGATGCTGCGGTTCGCAGAGCTGCAATGAATTACCTTCCCATGCTTTCTCATCAGCAACTCCTATACCTTTTAACAATGTCCTTTGTTTCAAGGTTTGATCATCTTTTGTTGTTATGTTTATCTCACTACTTGTTTGTCAAGAGATGA 1503 44.38 MGGVEIPKWLKGLPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKIIPPFPKPSKKYVISNLNKSLSRSAELSRDLNVSNVSPPSKLGSAGGANEGEFRAVFTTRHQELGQSVRKTKGVVQNPQFGVHKQVWQSGEIYTLEQFESKSKVFARSVLSGIKEPSPLVVESLFWKAATDKPIYVEYANDVPGSAFGEPEGKFRYFHRRRRKRNYYHRNKEQSSEIKSEEMETLTDTLLRDTGGISTRNDRNTSPEMWKPSTSTVSLEDASHYSRGKSSDSCINMEGTAGWRLSNSPWNLQVIARSPGSLTRYMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHVGSPKTWYSIPGDHAFAFEEVVRTQAYGGSVDHLAALTLLGEKTTLLSPETVIASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLSVAKDAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRFDHLLLLCLSHYLFVKR 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41895666 41899419 - Maker00039427 Lcy10g1749 645260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1749 500 MobiDBLite consensus disorder prediction 239 262 - -
Lcy10g1749 500 Pfam jmjN domain 17 50 IPR003349 -
Lcy10g1749 500 SUPERFAMILY Clavaminate synthase-like 252 457 - -
Lcy10g1749 500 Pfam JmjC domain, hydroxylase 324 442 IPR003347 -
Lcy10g1749 500 ProSiteProfiles JmjC domain profile. 293 459 IPR003347 -
Lcy10g1749 500 Gene3D Cupin 9 273 - -
Lcy10g1749 500 Gene3D Cupin 274 463 - -
Lcy10g1749 500 SMART cupin_9 290 459 IPR003347 -
Lcy10g1749 500 SMART JmjN_1 15 55 IPR003349 -
Lcy10g1749 500 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 483 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Lcy10g1749 500 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1749 Lcy-Chr10:41895666 Lcy5g2162 Lcy-Chr5:44581015 3.05E-131 dispersed
Lcy10g1749 Lcy-Chr10:41895666 Lcy6g2248 Lcy-Chr6:47073484 3.27E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19025 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1749 - - - 0.0